Structure information

Rhodopsin

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

3OAX

SPECIES

Bos taurus

RESOLUTION

2.600

PREFERRED CHAIN

A

REFERENCE

10.1016/J.BPJ.2010.08.003

PUBLICATION DATE

Jan. 19, 2011

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
Retinal (11-cis) A117 3.32x32 TM3 hydrophobic
Retinal (11-cis) M207 5.42x43 TM5 hydrophobic
Retinal (11-cis) F212 5.47x47 TM5 hydrophobic
Retinal (11-cis) F261 6.44x44 TM6 hydrophobic
Retinal (11-cis) W265 6.48x48 TM6 hydrophobic
Retinal (11-cis) Y268 6.51x51 TM6 hydrophobic
Retinal (11-cis) A269 6.52x52 TM6 hydrophobic
Retinal (11-cis) A292 7.39x38 TM7 hydrophobic

Ligands

Retinal (11-cis)

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Residue Diagrams

F N I P F G L M I L L F M Y A A L M S F 1 L N L A V A D L F M V G F G F T T T L Y T 2 V V L S W L A I E G G L T A F F G E L N 3 A I M G V A F T W V M A L A C A A P P L 4 Y C F F I V I L P I I F H V V F M Y I V F 5 I I M V I A F L I C W L P Y A G V A F Y 6 V P N Y V A S T K A F F A P I T M F I 7
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ICL1 K K L R ICL1ECL1 Y F V F ECL1ICL2 P M S N F R F ICL2ECL2 W S R Y I P E G M Q C S C G I D Y Y T P H E E T ECL2ICL3 Q E ICL3ECL3 Q G S D F ECL3N-term M N G T E G P N F Y V P F S N K T G V V R S P F E A P Q Y Y L A N-termC-term C G K N P L G D D E A S T T V S K T E T S Q V A P A C-term E P W Q F S M L A A Y M F L L I M L G F P I N F L T L Y V T V Q H T P L N Y I L L N L A V A D L F M V F G G F T T T L Y T S L H G G P T G C N L E G F F A T L G G E I A L W S L V V L A I E R Y V V V C K G E N H A I M G V A F T W V M A L A C A A P P L V G N N E S F V I Y M F V V H F I I P L I V I F F C Y G Q L V F T V K E A A A Q Q S A T T Q K A E K E V T R M V I I M V I A F L I C W L P Y A G V A F Y I F T H G P I F M T I P A F F A K T S A V Y N P V I Y I M M N K Q M V T F R N C T L C
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Residue Table


GPCRdb(A)
GPCRdb(A)
Rhodopsin
TM3
3x32 3.32x32 A117
TM5
5x43 5.42x43 M207
5x47 5.47x47 F212
TM6
6x44 6.44x44 F261
6x48 6.48x48 W265
6x51 6.51x51 Y268
6x52 6.52x52 A269
TM7
7x38 7.39x38 A292