Structure information

Rhodopsin

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

5TE3

SPECIES

Bos taurus

RESOLUTION

2.700

PREFERRED CHAIN

A

REFERENCE

10.1073/PNAS.1617446114

PUBLICATION DATE

March 15, 2017

NGL is a WebGL based 3D viewer powered by MMTF.

Download PDB file

Ligand Interaction Browser

Download list in excel
Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
B-Octylglucoside F220 5.55x55 TM5 hydrophobic
B-Octylglucoside V227 5.62x62 TM5 hydrophobic
B-Octylglucoside K231 5.66x66 TM5 polar (charge-assisted hydrogen bond)
B-Octylglucoside T251 6.34x34 TM6 Van der Waals
B-Octylglucoside I255 6.38x38 TM6 hydrophobic
B-Octylglucoside I255 6.38x38 TM6 Van der Waals

Ligands

B-Octylglucoside

3D interaction viewer Download PDB file

NGL is a WebGL based 3D viewer powered by MMTF.


Residue Diagrams

F N I P F G L M I L L F M Y A A L M S F 1 L N L A V A D L F M V G F G F T T T L Y T 2 V V L S W L A I E G G L T A F F G E L N 3 A I M G V A F T W V M A L A C A A P P L 4 Y C F F I V I L P I I F H V V F M Y I V F 5 I I M V I A F L I C W L P Y A G V A F Y 6 V P N Y V A S T K A F F A P I T M F I 7
Download: PNG | SVG
ICL1 K K L R ICL1ECL1 Y F V F ECL1ICL2 P M S N F R F ICL2ECL2 W S R Y I P E G M Q C S C G I D Y Y T P H E E T ECL2ICL3 Q E ICL3ECL3 Q G S D F ECL3N-term M N G T E G P N F Y V P F S N K T G V V R S P F E A P Q Y Y L A N-termC-term C G K N P L G D D E A S T T V S K T E T S Q V A P A C-term E P W Q F S M L A A Y M F L L I M L G F P I N F L T L Y V T V Q H T P L N Y I L L N L A V A D L F M V F G G F T T T L Y T S L H G G P T G C N L E G F F A T L G G E I A L W S L V V L A I E R Y V V V C K G E N H A I M G V A F T W V M A L A C A A P P L V G N N E S F V I Y M F V V H F I I P L I V I F F C Y G Q L V F T V K E A A A Q Q S A T T Q K A E K E V T R M V I I M V I A F L I C W L P Y A G V A F Y I F T H G P I F M T I P A F F A K T S A V Y N P V I Y I M M N K Q M V T F R N C T L C
Download: PNG | SVG

Residue Table


GPCRdb(A)
GPCRdb(A)
Rhodopsin
TM5
5x55 5.55x55 F220
5x62 5.62x62 V227
5x66 5.66x66 K231
TM6
6x34 6.34x34 T251
6x38 6.38x38 I255