Structure information

NTS1 receptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

8FN0

SPECIES

Rattus norvegicus

RESOLUTION

2.890

PREFERRED CHAIN

A

REFERENCE

10.1021/ACS.BIOCHEM.3C00029

PUBLICATION DATE

March 29, 2023

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
neurotensin D54 N-term polar (hydrogen bond with backbone)
neurotensin D54 N-term Van der Waals
neurotensin L55 N-term Van der Waals
CHEMBL4576388 L106 2.43x43 TM2 hydrophobic
neurotensin F128 2.65x64 TM2 hydrophobic
neurotensin F128 2.65x64 TM2 Van der Waals
neurotensin H132 ECL1 Van der Waals
neurotensin H132 ECL1 polar (hydrogen bond with backbone)
neurotensin Y146 3.29x29 TM3 polar (hydrogen bond)
neurotensin Y146 3.29x29 TM3 Van der Waals
CHEMBL4576388 L163 3.46x46 TM3 hydrophobic
CHEMBL4576388 R167 3.50x50 TM3 polar (charge-assisted hydrogen bond)
CHEMBL4576388 I171 3.54x54 TM3 Van der Waals
neurotensin M208 4.64x65 TM4 Van der Waals
neurotensin V224 ECL2 Van der Waals
neurotensin V224 ECL2 hydrophobic
neurotensin C225 45.50x50 ECL2 polar (hydrogen bond with backbone)
neurotensin C225 45.50x50 ECL2 Van der Waals
neurotensin T226 45.51x51 ECL2 Van der Waals
neurotensin T226 45.51x51 ECL2 polar (hydrogen bond)
CHEMBL4576388 N257 5.58x58 TM5 Van der Waals
CHEMBL4576388 V309 6.36x36 TM6 Van der Waals
CHEMBL4576388 L310 6.37x37 TM6 hydrophobic
CHEMBL4576388 L310 6.37x37 TM6 Van der Waals
CHEMBL4576388 V313 6.40x40 TM6 hydrophobic
CHEMBL4576388 V313 6.40x40 TM6 Van der Waals
neurotensin R327 6.54x54 TM6 polar (charge-assisted hydrogen bond)
neurotensin F331 6.58x58 TM6 hydrophobic
neurotensin F331 6.58x58 TM6 Van der Waals
neurotensin W339 ECL3 Van der Waals
neurotensin W339 ECL3 hydrophobic
neurotensin Y347 7.31x30 TM7 polar (hydrogen bond)
neurotensin Y347 7.31x30 TM7 Van der Waals
CHEMBL4576388 Y369 7.53x53 TM7 Van der Waals
CHEMBL4576388 Y369 7.53x53 TM7 hydrophobic

Ligands

neurotensin

3D interaction viewer Download PDB file

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CHEMBL4576388

3D interaction viewer Download PDB file

NGL is a WebGL based 3D viewer powered by MMTF.


Residue Diagrams

S N G V T G V V F L A L Y I A T V L V K 1 G S L A L S D L L I L L L A M P V E L Y N 2 S A V N L A T A Y T C A D R L F Y Y G R 3 T K K F I S A I W L A S A L L A I P M 4 N L I S I V L M P F L F S M F T N V Q I V 5 R A V V I A F V V C W L P Y H V R R L M 6 I P N I A S S V Y F L A N T L M Y F Y 7
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ICL1 K S L Q ICL1ECL1 H H P W A F ECL1ICL2 P F K A K T L M ICL2ECL2 G L Q N R S G D G T H P G G L V C T P I V D ECL2ICL3 R V C T V G T H N G L E H S T F N M T I E ICL3ECL3 S D E Q W ECL3N-term M H L N S S V P Q G T P G E P D A Q P F S G P Q S E M E A T F L A L S L S N G S G N T S E S D T A G P N S D L D V N T D N-termC-term P G W R H R R K K R P T F S R K P N S M S S N H A F S T S A T R E T L Y C-term I Y S K V L V T A I Y L A L F V V G T V G N S V T A F T L A R K S L Q S T V H Y H L G S L A L S D L L I L L L A M P V E L Y N F I W V G D A G C R G Y Y F L R D A C T Y A T A L N V A S L S V E R Y L A I C H S R S R T K K F I S A I W L A S A L L A I P M L F T M T A T V K V V I Q V N T F M S F L F P M L V I S I L N T V I A N K L T V M V H Q A A E Q G P G R V Q A L R H G V L V L R A V V I A F V V C W L P Y H V R R L M F C Y I T T F L F D F Y H Y F Y M L T N A L F Y V S S A I N P I L Y N L V S A N F L S L C F R Q V T L A C
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Residue Table


GPCRdb(A)
GPCRdb(A)
NTS1 receptor
TM2
2x43 2.43x43 L106
2x64 2.65x64 F128
TM3
3x29 3.29x29 Y146
3x46 3.46x46 L163
3x50 3.50x50 R167
3x54 3.54x54 I171
TM4
4x65 4.64x65 M208
ECL2
45x50 45.50x50 C225
45x51 45.51x51 T226
TM5
5x58 5.58x58 N257
TM6
6x36 6.36x36 V309
6x37 6.37x37 L310
6x40 6.40x40 V313
6x54 6.54x54 R327
6x58 6.58x58 F331
TM7
7x30 7.31x30 Y347
7x53 7.53x53 Y369