Structure information

β2-adrenoceptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

8JJO

SPECIES

Homo sapiens

RESOLUTION

3.400

PREFERRED CHAIN

F

REFERENCE

10.1038/S41589-023-01389-0

PUBLICATION DATE

Sept. 6, 2023

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
CHEMBL1160734 W109 3.28x28 TM3 hydrophobic
CHEMBL1160734 D113 3.32x32 TM3 polar (charge-assisted hydrogen bond)
CHEMBL1160734 V114 3.33x33 TM3 Van der Waals
CHEMBL1160734 V114 3.33x33 TM3 hydrophobic
CHEMBL1160734 V117 3.36x36 TM3 Van der Waals
CHEMBL1160734 V117 3.36x36 TM3 hydrophobic
CHEMBL1160734 F193 45.52x52 ECL2 Van der Waals
CHEMBL1160734 F193 45.52x52 ECL2 hydrophobic
CHEMBL1160734 S203 5.42x43 TM5 Van der Waals
CHEMBL1160734 S207 5.46x461 TM5 Van der Waals
CHEMBL1160734 W353 6.48x48 TM6 Van der Waals
CHEMBL1160734 W353 6.48x48 TM6 hydrophobic
CHEMBL1160734 F356 6.51x51 TM6 hydrophobic
CHEMBL1160734 F356 6.51x51 TM6 Van der Waals
CHEMBL1160734 F357 6.52x52 TM6 aromatic (edge-to-face)
CHEMBL1160734 F357 6.52x52 TM6 Van der Waals
CHEMBL1160734 N360 6.55x55 TM6 Van der Waals
CHEMBL1160734 N379 7.39x38 TM7 Van der Waals
CHEMBL1160734 Y383 7.43x42 TM7 Van der Waals

Ligands

CHEMBL1160734

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Residue Diagrams

V N G F V I A L V I L S M V I G M G V V 1 T S L A C A D L V M G A L V V P F G A A H 2 V C L T E I S A T V C L V D I S T W F E 3 A R V I I L M V W I V S G L T S F L P I 4 Y V F V M I V L P V Y F S V I S S A I A Y 5 G I I M G T F T L C W L P F F I V N I V 6 L P N F G S N V Y G I W N L L I Y V E 7
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ICL1 E R L Q ICL1ECL1 M W T F ECL1ICL2 P F K Y Q S L L ICL2ECL2 W Y R A T H Q E A I N C Y A N E T C C D F F T ECL2ICL3 G R F H V Q N L S Q V E Q D G R T G H G L R R S ICL3ECL3 D N L I ECL3N-term M G Q P G N G S A F L L A P N G S H A P D H D V T N-termC-term L R R S S L K A Y G N G Y S S N G N T G E Q S G Y H V E Q E K E N K L L C E D L P G T E D F V G H Q G T V P S D N I D S Q G R N C S T N D S L L C-term Q E R D E V W V V G M G I V M S L I V L A I V F G N V L V I T A I A K F T V T N Y F I T S L A C A D L V M G L A V V P F G A A H I L M K G N F W C E F W T S I D V L C V T A S I E T L C V I A V D R Y F A I T S T K N K A R V I I L M V W I V S G L T S F L P I Q M H N Q A Y A I A S S I V S F Y V P L V I M V F V Y S R V F Q E A K R Q L Q K I D K S E S K F C L K E H K A L K T L G I I M G T F T L C W L P F F I V N I V H V I Q R K E V Y I L L N W I G Y V N S G F N P L I Y C R S P D F Q E F R I A L L C
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Residue Table


GPCRdb(A)
GPCRdb(A)
β2-adrenoceptor
TM3
3x28 3.28x28 W109
3x32 3.32x32 D113
3x33 3.33x33 V114
3x36 3.36x36 V117
ECL2
45x52 45.52x52 F193
TM5
5x43 5.42x43 S203
5x461 5.46x461 S207
TM6
6x48 6.48x48 W286
6x51 6.51x51 F289
6x52 6.52x52 F290
6x55 6.55x55 N293
TM7
7x38 7.39x38 N312
7x42 7.43x42 Y316