Structure information

TA1 receptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

8JLP

SPECIES

Homo sapiens

RESOLUTION

3.230

PREFERRED CHAIN

R

REFERENCE

10.1038/S41586-023-06804-Z

PUBLICATION DATE

Nov. 15, 2023

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
ralmitaront D103 3.32x32 TM3 polar (charge-assisted hydrogen bond)
ralmitaront I104 3.33x33 TM3 hydrophobic
ralmitaront I104 3.33x33 TM3 Van der Waals
ralmitaront S107 3.36x36 TM3 Van der Waals
ralmitaront S108 3.37x37 TM3 polar (hydrogen bond)
ralmitaront F112 3.41x41 TM3 hydrophobic
ralmitaront F112 3.41x41 TM3 Van der Waals
ralmitaront P151 4.53x53 TM4 Van der Waals
ralmitaront P151 4.53x53 TM4 hydrophobic
ralmitaront F154 4.56x56 TM4 Van der Waals
ralmitaront F154 4.56x56 TM4 hydrophobic
ralmitaront T194 5.42x43 TM5 Van der Waals
ralmitaront S198 5.46x461 TM5 Van der Waals
ralmitaront W264 6.48x48 TM6 hydrophobic
ralmitaront W264 6.48x48 TM6 Van der Waals
ralmitaront F267 6.51x51 TM6 hydrophobic
ralmitaront F267 6.51x51 TM6 Van der Waals
ralmitaront F268 6.52x52 TM6 aromatic (edge-to-face)
ralmitaront I290 7.39x38 TM7 Van der Waals
ralmitaront I290 7.39x38 TM7 hydrophobic

Ligands

ralmitaront

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Residue Diagrams

L N G V L T T L I I L V M L S Y L S A R 1 H S M A T V D F L L G L C V M P Y S M V R 2 F S L H F I S A S S L M I D T S T H I K 3 I C V M I F I S W S V P A V F A F G M I 4 Y V C L M I S G P I Y F S T M F T L V G S 5 G I V M G V F L I C W C P F F I C T V M 6 M P N F T S N L Y G F W I L V D N L T 7
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ICL1 K Q L H ICL1ECL1 C W Y F ECL1ICL2 P L R Y K A K M ICL2ECL2 L N F K G A E E I Y Y K H V H C R G G C S V F F ECL2ICL3 I G L E M K ICL3ECL3 H Y I I ECL3N-term M M P F C H N I I N I S C V K N N W S N N-termC-term G K I F Q K D S S R C K L F L E L S S C-term D V R A S L Y S L M V L I I L T T L V G N L I V I V S I S H F T P T N W L I H S M A T V D F L L G C L V M P Y S M V R S A E H G E V F C K I H T S T D I M L S S A S I F H L S F I S I D R Y Y A V C D N I L V I C V M I F I S W S V P A V F A F G M I F L E S K I S G V L T F M T S F Y I P G S I M L C V Y Y R I Y L I A K E Q A R L I S D A N Q K L Q N G I S Q S K E R K A V K T L G I V M G V F L I C W C P F F I C T V M D P F L P P T L N D V L I W F G Y L N S T F N P M V Y A F F Y P W L K M F R K A M L F
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Residue Table


GPCRdb(A)
GPCRdb(A)
TA1 receptor
TM3
3x32 3.32x32 D103
3x33 3.33x33 I104
3x36 3.36x36 S107
3x37 3.37x37 S108
3x41 3.41x41 F112
TM4
4x53 4.53x53 P151
4x56 4.56x56 F154
TM5
5x43 5.42x43 T194
5x461 5.46x461 S198
TM6
6x48 6.48x48 W264
6x51 6.51x51 F267
6x52 6.52x52 F268
TM7
7x38 7.39x38 I290