Structure information

chemerin receptor 2

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

8XGM

SPECIES

Homo sapiens

RESOLUTION

3.290

PREFERRED CHAIN

A

REFERENCE

PUBLICATION DATE

Aug. 21, 2024

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
Retinoic acid receptor responder protein 2 Y15 N-term polar (hydrogen bond with backbone)
Retinoic acid receptor responder protein 2 Y15 N-term Van der Waals
Retinoic acid receptor responder protein 2 Y15 N-term polar (hydrogen bond)
Retinoic acid receptor responder protein 2 Y17 N-term Van der Waals
Retinoic acid receptor responder protein 2 Y17 N-term aromatic (face-to-face)
Retinoic acid receptor responder protein 2 D18 N-term Van der Waals
Retinoic acid receptor responder protein 2 Y21 N-term Van der Waals
Retinoic acid receptor responder protein 2 Y21 N-term hydrophobic
Retinoic acid receptor responder protein 2 Y22 N-term aromatic (face-to-edge)
Retinoic acid receptor responder protein 2 Y22 N-term Van der Waals
Retinoic acid receptor responder protein 2 S23 N-term polar (hydrogen bond with backbone)
Retinoic acid receptor responder protein 2 S23 N-term Van der Waals
Retinoic acid receptor responder protein 2 L24 N-term Van der Waals
Retinoic acid receptor responder protein 2 L24 N-term hydrophobic
Retinoic acid receptor responder protein 2 E25 N-term polar (charge-assisted hydrogen bond)
Retinoic acid receptor responder protein 2 S26 N-term Van der Waals
Retinoic acid receptor responder protein 2 S26 N-term polar (hydrogen bond)
Retinoic acid receptor responder protein 2 L28 N-term hydrophobic
Retinoic acid receptor responder protein 2 L28 N-term Van der Waals
Retinoic acid receptor responder protein 2 E29 N-term polar (charge-assisted hydrogen bond)
Retinoic acid receptor responder protein 2 F86 2.53x53 TM2 hydrophobic
Retinoic acid receptor responder protein 2 F86 2.53x53 TM2 Van der Waals
Retinoic acid receptor responder protein 2 Y93 2.60x60 TM2 polar (hydrogen bond)
Retinoic acid receptor responder protein 2 Y93 2.60x60 TM2 Van der Waals
Retinoic acid receptor responder protein 2 Y96 2.63x63 TM2 aromatic (face-to-face)
Retinoic acid receptor responder protein 2 Y96 2.63x63 TM2 polar (hydrogen bond)
Retinoic acid receptor responder protein 2 Y96 2.63x63 TM2 Van der Waals
Retinoic acid receptor responder protein 2 F101 ECL1 aromatic (face-to-edge)
Retinoic acid receptor responder protein 2 F101 ECL1 Van der Waals
Retinoic acid receptor responder protein 2 S114 3.29x29 TM3 Van der Waals
Retinoic acid receptor responder protein 2 Q118 3.33x33 TM3 polar (hydrogen bond)
Retinoic acid receptor responder protein 2 R176 4.64x64 TM4 polar (charge-assisted hydrogen bond)
Retinoic acid receptor responder protein 2 V179 ECL2 hydrophobic
Retinoic acid receptor responder protein 2 V179 ECL2 Van der Waals
Retinoic acid receptor responder protein 2 F181 ECL2 aromatic (face-to-edge)
Retinoic acid receptor responder protein 2 F181 ECL2 Van der Waals
Retinoic acid receptor responder protein 2 L186 ECL2 hydrophobic
Retinoic acid receptor responder protein 2 L186 ECL2 Van der Waals
Retinoic acid receptor responder protein 2 C187 45.50x50 ECL2 Van der Waals
Retinoic acid receptor responder protein 2 C187 45.50x50 ECL2 polar (hydrogen bond with backbone)
Retinoic acid receptor responder protein 2 Y188 45.51x51 ECL2 hydrophobic
Retinoic acid receptor responder protein 2 Y188 45.51x51 ECL2 Van der Waals
Retinoic acid receptor responder protein 2 N189 45.52x52 ECL2 polar (hydrogen bond)
Retinoic acid receptor responder protein 2 N189 45.52x52 ECL2 polar (hydrogen bond with backbone)
Retinoic acid receptor responder protein 2 N189 45.52x52 ECL2 Van der Waals
Retinoic acid receptor responder protein 2 F191 ECL2 hydrophobic
Retinoic acid receptor responder protein 2 Q192 ECL2 Van der Waals
Retinoic acid receptor responder protein 2 K193 ECL2 Van der Waals
Retinoic acid receptor responder protein 2 K193 ECL2 polar (hydrogen bond with backbone)
Retinoic acid receptor responder protein 2 H194 ECL2 polar (hydrogen bond)
Retinoic acid receptor responder protein 2 E269 6.58x58 TM6 polar (charge-assisted hydrogen bond)
Retinoic acid receptor responder protein 2 I272 6.61x61 TM6 Van der Waals
Retinoic acid receptor responder protein 2 I272 6.61x61 TM6 polar (hydrogen bond with backbone)
Retinoic acid receptor responder protein 2 S276 ECL3 Van der Waals
Retinoic acid receptor responder protein 2 Y277 ECL3 Van der Waals
Retinoic acid receptor responder protein 2 H279 7.28x27 TM7 aromatic (face-to-face)
Retinoic acid receptor responder protein 2 H279 7.28x27 TM7 Van der Waals
Retinoic acid receptor responder protein 2 M282 7.31x30 TM7 Van der Waals
Retinoic acid receptor responder protein 2 Q283 7.32x31 TM7 Van der Waals
Retinoic acid receptor responder protein 2 I286 7.35x34 TM7 hydrophobic
Retinoic acid receptor responder protein 2 I286 7.35x34 TM7 Van der Waals
Retinoic acid receptor responder protein 2 T290 7.39x38 TM7 Van der Waals

Ligands

Retinoic acid receptor responder protein 2

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Residue Diagrams

A N G P I G L V F A L C Y L V L S V W H 1 L N L A I A D F I F L L F L P L Y I S Y 2 V T L F F V S A F M N L Q A T F S N A K 3 S L I V I I F I W L L A S L I G G P A L 4 Y C I S M T L L P F L Y G I I F K V W T L 5 L V V V V A F V V C W T P Y H L F S I W 6 I P N L C S N L F A L G T S L P I G A 7
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ICL1 K K ICL1ECL1 F H W P F ECL1ICL2 P V L S H R H R ICL2ECL2 D T V E F N N H T L C Y N N F Q K H D P D ECL2ICL3 I L I ICL3ECL3 H N S Y S ECL3N-term M E D L E E T L F E E F E N Y S Y D L D Y Y S L E S D L E E K V Q L N-termC-term A E I L K Y T L W E V S C S G T V S E Q L R N S E T K N L C L L E T A Q C-term G V V H W V S L V L Y C L A F V L G I P G N A I V I W F T G F K W T V T T L W F L N L A I A D F I F L L F L P L Y I S Y V A M N G I W L C K A N S F T A Q L N M F A S V F F L T V I S L D H Y I H L I H T L K N S L I V I I F I W L L A S L I G G P A L Y F R L T L I R H H V L T W V K F I I G Y L F P L L T M S I C Y L C L I F K V K K R S S S R H F W T I L V V V V A F V V C W T P Y H L F S I W E L T I H H H V M Q A G I P L S T G L A F L N S C L N P I L Y V L I S K K F R S F Q A R S V
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Residue Table


GPCRdb(A)
GPCRdb(A)
chemerin receptor 2
TM2
2x53 2.53x53 F86
2x60 2.60x60 Y93
2x63 2.63x63 Y96
TM3
3x29 3.29x29 S114
3x33 3.33x33 Q118
TM4
4x64 4.64x64 R176
ECL2
45x50 45.50x50 C187
45x51 45.51x51 Y188
45x52 45.52x52 N189
TM6
6x58 6.58x58 E269
6x61 6.61x61 I272
TM7
7x27 7.28x27 H279
7x30 7.31x30 M282
7x31 7.32x31 Q283
7x34 7.35x34 I286
7x38 7.39x38 T290