FFA2 receptor - Gi1

GPCR CLASS (FAMILY)

Class A (Rhodopsin)

GPCR SPECIES

Homo sapiens

GPCR PREFERRED CHAIN

D

G PROTEIN (FAMILY)

Gi/o

G PROTEIN SPECIES

Homo sapiens

PDB CODE

8J24

RESOLUTION

2.6 Å

REFERENCE

10.1038/S41422-023-00914-Z

PUBLICATION DATE

Jan. 24, 2024

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.

LIGAND INTERACTIONS

5 interactions (Click to see)

LIGANDS

Acetic acid - Agonist pubchem

PHYSIOLOGICAL LIGANDS

propanoic acid, acetic acid, trans-2-methylcrotonic acid, butyric acid



GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, Gβ, Gγ, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic ICL2 K 118 34x54 G.hns1 R 32 G.hns1.03
Hydrophobic TM6 R 216 6x30 G.H5 K 345 G.H5.17
Van-der-waals TM6 R 216 6x30 G.H5 K 345 G.H5.17
Hydrophobic ICL2 Y 117 34x53 G.H5 N 347 G.H5.19
Van-der-waals ICL2 Y 117 34x53 G.H5 N 347 G.H5.19
Hydrophobic TM6 A 220 6x34 G.H5 F 354 G.H5.26
Polar ICL3 H 211 - G.S6 Y 320 G.S6.02
Aromatic ICL3 H 211 - G.S6 Y 320 G.S6.02
Hydrophobic ICL3 H 211 - G.S6 Y 320 G.S6.02
Van-der-waals ICL3 H 211 - G.S6 Y 320 G.S6.02
Polar TM3 R 107 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 107 3x50 G.H5 C 351 G.H5.23
Van-der-waals TM3 R 107 3x50 G.H5 C 351 G.H5.23
Hydrophobic ICL2 P 114 34x50 G.H5 T 340 G.H5.12
Hydrophobic ICL2 V 115 34x51 G.S3 L 194 G.S3.01
Hydrophobic TM6 A 220 6x34 G.H5 L 353 G.H5.25
Hydrophobic ICL3 H 211 - G.H5 D 341 G.H5.13
Van-der-waals ICL3 H 211 - G.H5 D 341 G.H5.13
Hydrophobic ICL2 V 115 34x51 G.H5 F 336 G.H5.08
Polar ICL1 Q 40 - G.HN G 27 G.HN.51
Hydrophobic ICL1 Q 40 - G.HN G 27 G.HN.51
Van-der-waals ICL1 Q 40 - G.HN G 27 G.HN.51
Ionic ICL3 H 211 - G.h4s6 E 318 G.h4s6.12
Polar ICL3 H 211 - G.h4s6 E 318 G.h4s6.12
Hydrophobic ICL3 H 211 - G.h4s6 E 318 G.h4s6.12
Van-der-waals ICL3 H 211 - G.h4s6 E 318 G.h4s6.12
Polar ICL2 R 121 34x57 G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 R 121 34x57 G.hns1 R 32 G.hns1.03
Hydrophobic ICL3 V 212 - G.H5 F 354 G.H5.26
Polar TM3 G 110 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 G 110 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 G 110 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM2 V 44 2x39 G.H5 D 350 G.H5.22
Hydrophobic ICL1 Q 40 - G.hns1 A 31 G.hns1.02
Hydrophobic ICL2 P 114 34x50 G.H5 I 344 G.H5.16
Van-der-waals ICL2 P 114 34x50 G.H5 I 344 G.H5.16
Polar ICL2 L 119 34x55 G.hns1 R 32 G.hns1.03
Hydrophobic ICL2 L 119 34x55 G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 L 119 34x55 G.hns1 R 32 G.hns1.03
Hydrophobic TM2 V 44 2x39 G.H5 C 351 G.H5.23
Van-der-waals TM2 V 44 2x39 G.H5 C 351 G.H5.23
Ionic ICL2 R 121 34x57 G.H5 D 350 G.H5.22
Polar ICL2 R 121 34x57 G.H5 D 350 G.H5.22
Polar ICL3 H 211 - G.H5 K 345 G.H5.17
Van-der-waals ICL3 H 211 - G.H5 K 345 G.H5.17
Hydrophobic TM6 L 223 6x37 G.H5 L 353 G.H5.25
Hydrophobic TM3 V 111 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 V 111 3x54 G.H5 L 348 G.H5.20
Hydrophobic ICL2 K 118 34x54 G.H5 I 343 G.H5.15
Polar ICL2 K 118 34x54 G.S1 E 33 G.S1.01
Hydrophobic ICL2 V 115 34x51 G.H5 I 343 G.H5.15
Hydrophobic TM5 F 202 5x61 G.H5 L 348 G.H5.20
Van-der-waals ICL2 K 118 34x54 G.S1 V 34 G.S1.02
Hydrophobic TM5 M 206 5x65 G.H5 L 348 G.H5.20
Van-der-waals TM5 M 206 5x65 G.H5 L 348 G.H5.20
Hydrophobic TM6 A 220 6x34 G.H5 L 348 G.H5.20
Hydrophobic ICL2 L 119 34x55 G.S3 L 194 G.S3.01
Hydrophobic ICL2 L 119 34x55 G.s2s3 D 193 G.s2s3.02
Van-der-waals ICL2 L 119 34x55 G.s2s3 D 193 G.s2s3.02
Polar TM2 H 45 2x40 G.H5 D 350 G.H5.22
Hydrophobic TM2 H 45 2x40 G.H5 D 350 G.H5.22
Van-der-waals TM2 H 45 2x40 G.H5 D 350 G.H5.22
Hydrophobic TM3 R 107 3x50 G.H5 L 353 G.H5.25
Van-der-waals TM3 R 107 3x50 G.H5 L 353 G.H5.25
Hydrophobic ICL2 P 114 34x50 G.H5 I 343 G.H5.15
Van-der-waals ICL2 P 114 34x50 G.H5 I 343 G.H5.15
Hydrophobic TM5 F 202 5x61 G.H5 L 353 G.H5.25
Van-der-waals TM5 F 202 5x61 G.H5 L 353 G.H5.25
Polar ICL2 P 114 34x50 G.H5 N 347 G.H5.19
Van-der-waals ICL2 P 114 34x50 G.H5 N 347 G.H5.19
Hydrophobic TM5 M 206 5x65 G.H5 I 344 G.H5.16
Aromatic TM6 R 216 6x30 G.H5 F 354 G.H5.26
Hydrophobic TM6 R 216 6x30 G.H5 F 354 G.H5.26
Van-der-waals TM6 R 216 6x30 G.H5 F 354 G.H5.26