chemerin receptor - Gi1

GPCR CLASS (FAMILY)

Class A (Rhodopsin)

GPCR SPECIES

Homo sapiens

GPCR PREFERRED CHAIN

R

G PROTEIN (FAMILY)

Gi/o

G PROTEIN SPECIES

Homo sapiens

PDB CODE

8SG1

RESOLUTION

2.9 Å

REFERENCE

10.1371/JOURNAL.PBIO.3002188

PUBLICATION DATE

Nov. 1, 2023

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.

LIGAND INTERACTIONS

52 interactions (Click to see)

LIGANDS

chemerin C-terminal peptide - Agonist pubchem gtoplig chembl_ligand pubchem

PHYSIOLOGICAL LIGANDS

EPA, resolvin E1, chemerin, chemerin C-terminal peptide, 18R-HEPE



GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, Gβ, Gγ, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic ICL3 L 252 - G.H5 K 345 G.H5.17
Van-der-waals ICL3 L 252 - G.H5 K 345 G.H5.17
Hydrophobic ICL2 V 145 34x51 G.H5 F 336 G.H5.08
Van-der-waals ICL2 V 145 34x51 G.H5 F 336 G.H5.08
Hydrophobic TM5 K 246 5x64 G.H5 I 344 G.H5.16
Hydrophobic ICL2 P 144 34x50 G.H5 T 340 G.H5.12
Van-der-waals ICL2 P 144 34x50 G.H5 T 340 G.H5.12
Hydrophobic ICL3 L 252 - G.H5 I 344 G.H5.16
Van-der-waals ICL3 L 252 - G.H5 I 344 G.H5.16
Polar ICL2 R 151 34x57 G.hns1 R 32 G.hns1.03
Hydrophobic TM6 I 261 6x36 G.H5 L 353 G.H5.25
Van-der-waals TM6 I 261 6x36 G.H5 L 353 G.H5.25
Hydrophobic ICL2 V 145 34x51 G.S3 L 194 G.S3.01
Polar TM3 S 140 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 S 140 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 S 140 3x53 G.H5 N 347 G.H5.19
Hydrophobic ICL2 Q 148 34x54 G.S3 L 194 G.S3.01
Van-der-waals ICL2 Q 148 34x54 G.S3 L 194 G.S3.01
Hydrophobic ICL2 P 144 34x50 G.H5 I 344 G.H5.16
Van-der-waals ICL2 P 144 34x50 G.H5 I 344 G.H5.16
Hydrophobic ICL2 Q 148 34x54 G.H5 I 343 G.H5.15
Van-der-waals ICL2 Q 148 34x54 G.H5 I 343 G.H5.15
Polar ICL2 S 147 34x53 G.H5 N 347 G.H5.19
Polar ICL2 N 149 34x55 G.s2s3 D 193 G.s2s3.02
Van-der-waals ICL2 N 149 34x55 G.s2s3 D 193 G.s2s3.02
Hydrophobic TM6 K 257 6x32 G.H5 F 354 G.H5.26
Van-der-waals TM6 K 257 6x32 G.H5 F 354 G.H5.26
Hydrophobic ICL3 A 253 - G.H5 F 354 G.H5.26
Van-der-waals ICL3 A 253 - G.H5 F 354 G.H5.26
Polar TM2 N 74 2x39 G.H5 C 351 G.H5.23
Hydrophobic TM2 N 74 2x39 G.H5 C 351 G.H5.23
Hydrophobic TM6 I 262 6x37 G.H5 L 353 G.H5.25
Polar ICL2 N 149 34x55 G.hns1 R 32 G.hns1.03
Hydrophobic ICL2 N 149 34x55 G.hns1 R 32 G.hns1.03
Polar TM6 P 258 6x33 G.H5 L 353 G.H5.25
Hydrophobic TM6 P 258 6x33 G.H5 L 353 G.H5.25
Van-der-waals TM6 P 258 6x33 G.H5 L 353 G.H5.25
Hydrophobic ICL2 P 144 34x50 G.H5 I 343 G.H5.15
Hydrophobic ICL3 L 252 - G.H5 F 354 G.H5.26
Van-der-waals ICL3 L 252 - G.H5 F 354 G.H5.26
Hydrophobic TM5 I 243 5x61 G.H5 L 353 G.H5.25
Hydrophobic TM5 L 247 5x65 G.H5 L 348 G.H5.20
Van-der-waals TM5 L 247 5x65 G.H5 L 348 G.H5.20
Hydrophobic TM6 K 257 6x32 G.H5 L 353 G.H5.25
Van-der-waals TM6 K 257 6x32 G.H5 L 353 G.H5.25
Hydrophobic TM6 P 258 6x33 G.H5 F 354 G.H5.26
Van-der-waals TM6 P 258 6x33 G.H5 F 354 G.H5.26
Polar ICL2 Q 148 34x54 G.hns1 R 32 G.hns1.03
Hydrophobic ICL2 Q 148 34x54 G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 Q 148 34x54 G.hns1 R 32 G.hns1.03
Polar TM3 R 137 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 137 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 V 141 3x54 G.H5 I 344 G.H5.16
Hydrophobic ICL2 V 145 34x51 G.s2s3 D 193 G.s2s3.02
Van-der-waals ICL3 K 254 - G.h4s6 D 315 G.h4s6.09
Hydrophobic TM3 V 141 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 V 141 3x54 G.H5 L 348 G.H5.20
Hydrophobic TM3 R 137 3x50 G.H5 L 353 G.H5.25
Van-der-waals TM3 R 137 3x50 G.H5 L 353 G.H5.25
Hydrophobic TM5 L 247 5x65 G.H5 F 354 G.H5.26