β2-adrenoceptor - Gs

GPCR CLASS (FAMILY)

Class A (Rhodopsin)

GPCR SPECIES

Homo sapiens

GPCR PREFERRED CHAIN

R

G PROTEIN (FAMILY)

Gs

G PROTEIN SPECIES

Homo sapiens

PDB CODE

RESOLUTION

3.6 Å

REFERENCE

PUBLICATION DATE

March 6, 2024

3D VIEW

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LIGAND INTERACTIONS

LIGANDS

(5R,6R)-6-(methylamino)-5,6,7,8-tetrahydronaphthalene-1,2,5-triol - Agonist pubchem

PHYSIOLOGICAL LIGANDS

L-NOREPINEPHRINE, (-)-adrenaline, noradrenaline, Zn2+, (-)-noradrenaline



GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

, , , GPCR
Interaction cut-off: strict (stick), loose (line)

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Interaction
type
GPCR
Segment

AA

Number
Generic
number

segment

AA

Number
Generic
number
Hydrophobic ICL2 F 139 34x51 G.S3 V 217 G.S3.01
Polar TM5 Q 229 5x68 G.H5 Q 384 G.H5.16
Van-der-waals TM5 Q 229 5x68 G.H5 Q 384 G.H5.16
Hydrophobic ICL2 P 138 34x50 G.H5 R 380 G.H5.12
Hydrophobic TM3 I 135 3x54 G.H5 Y 391 G.H5.23
Hydrophobic ICL2 P 138 34x50 G.H5 I 383 G.H5.15
Van-der-waals ICL2 P 138 34x50 G.H5 I 383 G.H5.15
Hydrophobic ICL2 F 139 34x51 G.H5 I 383 G.H5.15
Hydrophobic TM5 I 233 5x72 G.H5 R 385 G.H5.17
Polar H8 S 329 8x47 G.H5 E 392 G.H5.24
Polar TM5 Q 229 5x68 G.H5 R 385 G.H5.17
Hydrophobic TM5 Q 229 5x68 G.H5 R 385 G.H5.17
Van-der-waals TM5 Q 229 5x68 G.H5 R 385 G.H5.17
Hydrophobic ICL2 P 138 34x50 G.H5 Q 384 G.H5.16
Hydrophobic TM6 A 271 6x33 G.H5 L 394 G.H5.26
Van-der-waals TM6 A 271 6x33 G.H5 L 394 G.H5.26
Hydrophobic ICL2 P 138 34x50 G.H5 H 387 G.H5.19
Aromatic ICL2 F 139 34x51 G.H5 F 376 G.H5.08
Hydrophobic ICL2 F 139 34x51 G.H5 F 376 G.H5.08
Van-der-waals ICL2 F 139 34x51 G.H5 F 376 G.H5.08
Van-der-waals ICL4 R 328 - G.H5 E 392 G.H5.24
Polar TM6 T 274 6x36 G.H5 L 393 G.H5.25
Hydrophobic TM6 T 274 6x36 G.H5 L 393 G.H5.25
Van-der-waals TM6 T 274 6x36 G.H5 L 393 G.H5.25
Hydrophobic TM6 K 270 6x32 G.H5 L 393 G.H5.25
Hydrophobic TM5 A 226 5x65 G.H5 L 388 G.H5.20
Hydrophobic ICL2 F 139 34x51 G.S1 H 41 G.S1.02
Van-der-waals ICL2 F 139 34x51 G.S1 H 41 G.S1.02
Polar TM3 A 134 3x53 G.H5 H 387 G.H5.19
Van-der-waals TM3 A 134 3x53 G.H5 H 387 G.H5.19
Hydrophobic ICL2 F 139 34x51 G.H5 R 380 G.H5.12
Polar TM3 T 136 3x55 G.H5 R 380 G.H5.12
Van-der-waals TM3 T 136 3x55 G.H5 R 380 G.H5.12
Hydrophobic ICL3 R 239 - G.h4s6 T 350 G.h4s6.03
Hydrophobic ICL2 F 139 34x51 G.S3 F 219 G.S3.03
Aromatic TM3 R 131 3x50 G.H5 Y 391 G.H5.23
Hydrophobic TM3 R 131 3x50 G.H5 Y 391 G.H5.23
Van-der-waals TM3 R 131 3x50 G.H5 Y 391 G.H5.23
Hydrophobic ICL2 Y 141 34x53 G.H5 H 387 G.H5.19