Golf - M2 receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gs

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 87.8

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.8
iPTM Score: 0.8
PAE mean: 12.6


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM5 D 220 5x72 G.H4 L 333 G.H4.16
Van-der-waals TM5 D 220 5x72 G.H4 L 333 G.H4.16
Ionic TM5 D 220 5x72 G.H4 R 329 G.H4.12
Polar TM5 D 220 5x72 G.H4 R 329 G.H4.12
Hydrophobic TM5 D 220 5x72 G.H4 R 329 G.H4.12
Van-der-waals TM5 D 220 5x72 G.H4 R 329 G.H4.12
Hydrophobic ICL2 L 129 34x51 G.H5 R 367 G.H5.12
Ionic TM6 R 381 6x29 G.H5 D 368 G.H5.13
Polar TM6 R 381 6x29 G.H5 D 368 G.H5.13
Van-der-waals TM6 R 381 6x29 G.H5 D 368 G.H5.13
Hydrophobic TM6 R 381 6x29 G.H5 R 372 G.H5.17
Van-der-waals TM6 R 381 6x29 G.H5 R 372 G.H5.17
Hydrophobic TM5 I 217 5x69 G.h4s6 Y 345 G.h4s6.20
Polar H8 N 444 8x47 G.H5 E 379 G.H5.24
Hydrophobic H8 N 444 8x47 G.H5 E 379 G.H5.24
Van-der-waals H8 N 444 8x47 G.H5 E 379 G.H5.24
Polar TM3 C 124 3x53 G.H5 Y 378 G.H5.23
Hydrophobic TM3 C 124 3x53 G.H5 Y 378 G.H5.23
Van-der-waals TM3 C 124 3x53 G.H5 Y 378 G.H5.23
Polar TM2 N 58 2x39 G.H5 Q 377 G.H5.22
Hydrophobic TM2 N 58 2x39 G.H5 Q 377 G.H5.22
Van-der-waals TM2 N 58 2x39 G.H5 Q 377 G.H5.22
Hydrophobic ICL2 P 132 34x54 G.H5 H 374 G.H5.19
Van-der-waals ICL2 P 132 34x54 G.H5 H 374 G.H5.19
Polar TM5 K 218 5x70 G.hgh4 T 312 G.hgh4.15
Polar TM3 V 125 3x54 G.H5 Q 371 G.H5.16
Hydrophobic TM3 V 125 3x54 G.H5 Q 371 G.H5.16
Van-der-waals TM3 V 125 3x54 G.H5 Q 371 G.H5.16
Polar TM6 R 381 6x29 G.H5 Q 371 G.H5.16
Hydrophobic TM6 R 381 6x29 G.H5 Q 371 G.H5.16
Van-der-waals TM6 R 381 6x29 G.H5 Q 371 G.H5.16
Hydrophobic TM6 I 392 6x40 G.H5 L 380 G.H5.25
Polar TM3 D 120 3x49 G.H5 Y 378 G.H5.23
Van-der-waals TM3 D 120 3x49 G.H5 Y 378 G.H5.23
Hydrophobic TM5 I 217 5x69 G.H5 R 372 G.H5.17
Van-der-waals TM5 I 217 5x69 G.H5 R 372 G.H5.17
Hydrophobic ICL2 L 129 34x51 G.H5 F 363 G.H5.08
Van-der-waals ICL2 L 129 34x51 G.H5 F 363 G.H5.08
Polar TM6 T 388 6x36 G.H5 L 380 G.H5.25
Hydrophobic TM6 T 388 6x36 G.H5 L 380 G.H5.25
Polar TM6 K 384 6x32 G.H5 L 381 G.H5.26
Hydrophobic TM6 K 384 6x32 G.H5 L 381 G.H5.26
Van-der-waals TM6 K 384 6x32 G.H5 L 381 G.H5.26
Hydrophobic TM5 I 217 5x69 G.S6 Y 347 G.S6.02
Van-der-waals TM5 I 217 5x69 G.S6 Y 347 G.S6.02
Polar H8 N 444 8x47 G.H5 Q 377 G.H5.22
Hydrophobic ICL2 P 128 34x50 G.H5 R 367 G.H5.12
Van-der-waals ICL2 P 128 34x50 G.H5 R 367 G.H5.12
Hydrophobic ICL2 T 130 34x52 G.S3 V 204 G.S3.01
Polar TM3 R 121 3x50 G.H5 Y 378 G.H5.23
Hydrophobic TM3 R 121 3x50 G.H5 Y 378 G.H5.23
Van-der-waals TM3 R 121 3x50 G.H5 Y 378 G.H5.23
Hydrophobic TM5 I 209 5x61 G.H5 L 380 G.H5.25
Polar ICL2 R 135 34x57 G.H5 Y 378 G.H5.23
Hydrophobic TM6 I 389 6x37 G.H5 L 380 G.H5.25
Hydrophobic TM5 I 209 5x61 G.H5 L 375 G.H5.20
Polar TM5 A 212 5x64 G.H5 Q 371 G.H5.16
Hydrophobic TM5 A 212 5x64 G.H5 Q 371 G.H5.16
Van-der-waals TM5 A 212 5x64 G.H5 Q 371 G.H5.16
Hydrophobic TM3 V 125 3x54 G.H5 L 375 G.H5.20
Van-der-waals TM3 V 125 3x54 G.H5 L 375 G.H5.20
Hydrophobic TM6 R 381 6x29 G.H5 L 375 G.H5.20
Van-der-waals TM6 R 381 6x29 G.H5 L 375 G.H5.20
Polar TM3 C 124 3x53 G.H5 H 374 G.H5.19
Hydrophobic TM3 C 124 3x53 G.H5 H 374 G.H5.19
Van-der-waals TM3 C 124 3x53 G.H5 H 374 G.H5.19
Hydrophobic TM6 R 381 6x29 G.H5 L 381 G.H5.26
Van-der-waals TM6 R 381 6x29 G.H5 L 381 G.H5.26
Polar TM6 V 385 6x33 G.H5 L 380 G.H5.25
Hydrophobic TM6 V 385 6x33 G.H5 L 380 G.H5.25
Van-der-waals TM6 V 385 6x33 G.H5 L 380 G.H5.25
Hydrophobic ICL2 P 128 34x50 G.H5 H 374 G.H5.19
Van-der-waals ICL2 P 128 34x50 G.H5 H 374 G.H5.19
Hydrophobic TM5 S 213 5x65 G.H5 L 375 G.H5.20
Hydrophobic TM5 R 216 5x68 G.H5 R 367 G.H5.12
Van-der-waals TM5 R 216 5x68 G.H5 R 367 G.H5.12
Hydrophobic ICL2 P 128 34x50 G.H5 I 370 G.H5.15
Van-der-waals ICL2 P 128 34x50 G.H5 I 370 G.H5.15
Hydrophobic ICL2 L 129 34x51 G.S3 V 204 G.S3.01
Van-der-waals ICL2 L 129 34x51 G.S3 V 204 G.S3.01
Hydrophobic TM7 C 443 7x56 G.H5 E 379 G.H5.24
Van-der-waals TM7 C 443 7x56 G.H5 E 379 G.H5.24
Hydrophobic ICL2 L 129 34x51 G.H5 C 366 G.H5.11
Polar TM5 R 216 5x68 G.H5 N 364 G.H5.09
Hydrophobic TM5 R 216 5x68 G.H5 N 364 G.H5.09
Van-der-waals TM5 R 216 5x68 G.H5 N 364 G.H5.09
Polar TM5 K 218 5x70 G.hgh4 D 310 G.hgh4.13
Hydrophobic TM5 R 216 5x68 G.H5 D 368 G.H5.13
Polar TM5 S 215 5x67 G.H5 R 372 G.H5.17
Van-der-waals TM5 S 215 5x67 G.H5 R 372 G.H5.17
Polar H8 A 445 8x48 G.H5 E 379 G.H5.24
Hydrophobic ICL2 L 129 34x51 G.H5 I 370 G.H5.15
Van-der-waals ICL2 L 129 34x51 G.H5 I 370 G.H5.15
Polar ICL2 L 129 34x51 G.S1 H 43 G.S1.02
Hydrophobic ICL2 L 129 34x51 G.S1 H 43 G.S1.02
Van-der-waals ICL2 L 129 34x51 G.S1 H 43 G.S1.02
Hydrophobic TM4 T 136 4x38 G.HN L 37 G.HN.52
Hydrophobic TM6 V 385 6x33 G.H5 L 375 G.H5.20
Hydrophobic TM6 V 385 6x33 G.H5 L 381 G.H5.26
Polar TM2 N 58 2x39 G.H5 Y 378 G.H5.23
Hydrophobic TM2 N 58 2x39 G.H5 Y 378 G.H5.23
Van-der-waals TM2 N 58 2x39 G.H5 Y 378 G.H5.23
Hydrophobic ICL2 V 133 34x55 G.hns1 K 40 G.hns1.02
Hydrophobic ICL2 V 133 34x55 G.hns1 A 41 G.hns1.03
Van-der-waals ICL2 V 133 34x55 G.hns1 A 41 G.hns1.03
Hydrophobic ICL2 P 128 34x50 G.H5 Q 371 G.H5.16