Golf - ADGRE2 complex model

GPCR CLASS (FAMILY)

B2 (Adhesion)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gs

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 84.6

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.6
iPTM Score: 0.6
PAE mean: 17.9


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic ICL2 R 641 - G.HN L 37 G.HN.52
Van-der-waals ICL2 R 641 - G.HN L 37 G.HN.52
Hydrophobic TM6 L 730 6x38 G.H5 L 380 G.H5.25
Van-der-waals TM6 L 730 6x38 G.H5 L 380 G.H5.25
Hydrophobic TM5 L 714 5x65 G.H5 L 375 G.H5.20
Hydrophobic TM3 T 627 3x57 G.H5 Y 378 G.H5.23
Van-der-waals TM3 T 627 3x57 G.H5 Y 378 G.H5.23
Polar TM3 Y 623 3x53 G.H5 Y 378 G.H5.23
Hydrophobic TM3 Y 623 3x53 G.H5 Y 378 G.H5.23
Van-der-waals TM3 Y 623 3x53 G.H5 Y 378 G.H5.23
Polar ICL2 Y 636 - G.H5 Y 378 G.H5.23
Aromatic ICL2 Y 636 - G.H5 Y 378 G.H5.23
Hydrophobic ICL2 Y 636 - G.H5 Y 378 G.H5.23
Van-der-waals ICL2 Y 636 - G.H5 Y 378 G.H5.23
Hydrophobic ICL2 S 637 - G.hns1 K 40 G.hns1.02
Polar TM5 S 716 5x67 G.H5 Q 371 G.H5.16
Hydrophobic ICL2 N 635 - G.hns1 K 40 G.hns1.02
Polar ICL3 N 718 - G.H5 D 368 G.H5.13
Hydrophobic ICL3 N 718 - G.H5 D 368 G.H5.13
Van-der-waals ICL3 N 718 - G.H5 D 368 G.H5.13
Polar H8 Q 783 8x48 G.H5 E 379 G.H5.24
Hydrophobic ICL3 V 721 - G.S6 Y 347 G.S6.02
Van-der-waals ICL3 V 721 - G.S6 Y 347 G.S6.02
Ionic H8 E 787 8x52 G.h4s6 K 343 G.h4s6.12
Polar H8 E 787 8x52 G.h4s6 K 343 G.h4s6.12
Hydrophobic H8 E 787 8x52 G.h4s6 K 343 G.h4s6.12
Van-der-waals H8 E 787 8x52 G.h4s6 K 343 G.h4s6.12
Hydrophobic TM5 L 710 5x61 G.H5 L 380 G.H5.25
Hydrophobic ICL2 L 631 - G.H5 L 375 G.H5.20
Van-der-waals ICL2 L 631 - G.H5 L 375 G.H5.20
Hydrophobic TM5 L 717 5x68 G.H5 D 368 G.H5.13
Van-der-waals TM5 L 717 5x68 G.H5 D 368 G.H5.13
Hydrophobic TM5 R 713 5x64 G.H5 Q 371 G.H5.16
Polar H8 Q 784 8x49 G.H5 E 379 G.H5.24
Hydrophobic TM5 L 717 5x68 G.H5 R 372 G.H5.17
Hydrophobic TM5 L 717 5x68 G.H5 L 381 G.H5.26
Ionic TM6 K 733 6x41 G.H5 E 379 G.H5.24
Polar TM6 K 733 6x41 G.H5 E 379 G.H5.24
Hydrophobic TM6 K 733 6x41 G.H5 E 379 G.H5.24
Van-der-waals TM6 K 733 6x41 G.H5 E 379 G.H5.24
Hydrophobic ICL2 T 632 - G.H5 Q 371 G.H5.16
Hydrophobic TM5 L 710 5x61 G.H5 L 375 G.H5.20
Van-der-waals TM5 L 710 5x61 G.H5 L 375 G.H5.20
Polar H8 S 782 8x47 G.H5 E 379 G.H5.24
Hydrophobic H8 S 782 8x47 G.H5 E 379 G.H5.24
Van-der-waals H8 S 782 8x47 G.H5 E 379 G.H5.24
Polar ICL3 S 722 - G.H5 R 372 G.H5.17
Hydrophobic ICL3 S 722 - G.H5 R 372 G.H5.17
Van-der-waals ICL3 S 722 - G.H5 R 372 G.H5.17
Hydrophobic ICL2 L 631 - G.H5 Q 371 G.H5.16
Hydrophobic ICL2 V 634 - G.S1 H 43 G.S1.02
Van-der-waals ICL2 V 634 - G.S1 H 43 G.S1.02
Hydrophobic ICL2 V 634 - G.hns1 A 41 G.hns1.03
Hydrophobic ICL3 V 721 - G.S6 C 346 G.S6.01
Van-der-waals ICL3 V 721 - G.S6 C 346 G.S6.01
Hydrophobic ICL2 V 634 - G.S3 V 204 G.S3.01
Hydrophobic TM5 L 714 5x65 G.H5 L 381 G.H5.26
Aromatic ICL2 Y 636 - G.H5 H 374 G.H5.19
Hydrophobic ICL2 Y 636 - G.H5 H 374 G.H5.19
Hydrophobic ICL2 N 635 - G.hns1 A 41 G.hns1.03
Van-der-waals ICL2 N 635 - G.hns1 A 41 G.hns1.03
Polar ICL3 N 718 - G.H5 R 372 G.H5.17
Van-der-waals ICL3 N 718 - G.H5 R 372 G.H5.17
Hydrophobic ICL3 V 721 - G.h4s6 Y 345 G.h4s6.20
Van-der-waals ICL3 V 721 - G.h4s6 Y 345 G.h4s6.20
Hydrophobic ICL3 L 724 - G.H5 L 381 G.H5.26
Hydrophobic TM5 L 717 5x68 G.H5 Q 371 G.H5.16
Hydrophobic TM5 L 717 5x68 G.H5 L 375 G.H5.20
Hydrophobic TM3 L 624 3x54 G.H5 L 380 G.H5.25
Polar ICL3 S 722 - G.h4s6 Y 345 G.h4s6.20
Hydrophobic ICL3 S 722 - G.h4s6 Y 345 G.h4s6.20
Van-der-waals ICL3 S 722 - G.h4s6 Y 345 G.h4s6.20
Polar ICL2 N 635 - G.HN L 37 G.HN.52
Polar ICL2 L 631 - G.H5 H 374 G.H5.19
Hydrophobic ICL2 L 631 - G.H5 H 374 G.H5.19
Van-der-waals ICL2 L 631 - G.H5 H 374 G.H5.19