Golf - ADGRF4 complex model

GPCR CLASS (FAMILY)

B2 (Adhesion)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gs

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 86.6

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.8
iPTM Score: 0.8
PAE mean: 12.7


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic ICL2 I 505 - G.H5 R 367 G.H5.12
Van-der-waals ICL2 I 505 - G.H5 R 367 G.H5.12
Polar ICL1 T 433 - G.H5 Q 377 G.H5.22
Van-der-waals ICL1 T 433 - G.H5 Q 377 G.H5.22
Polar TM6 N 606 6x41 G.H5 L 380 G.H5.25
Hydrophobic TM6 N 606 6x41 G.H5 L 380 G.H5.25
Van-der-waals TM6 N 606 6x41 G.H5 L 380 G.H5.25
Polar TM3 I 498 3x54 G.H5 H 374 G.H5.19
Van-der-waals TM3 I 498 3x54 G.H5 H 374 G.H5.19
Polar H8 K 658 8x49 G.H5 K 376 G.H5.21
Polar ICL2 F 506 - G.S1 H 43 G.S1.02
Aromatic ICL2 F 506 - G.S1 H 43 G.S1.02
Hydrophobic ICL2 F 506 - G.S1 H 43 G.S1.02
Van-der-waals ICL2 F 506 - G.S1 H 43 G.S1.02
Hydrophobic ICL2 F 506 - G.H5 I 370 G.H5.15
Van-der-waals ICL2 F 506 - G.H5 I 370 G.H5.15
Polar ICL3 P 587 - G.H5 R 372 G.H5.17
Hydrophobic ICL2 F 506 - G.S3 V 204 G.S3.01
Van-der-waals ICL2 F 506 - G.S3 V 204 G.S3.01
Hydrophobic H8 D 656 8x47 G.H5 E 379 G.H5.24
Van-der-waals H8 D 656 8x47 G.H5 E 379 G.H5.24
Hydrophobic ICL2 F 506 - G.H5 C 366 G.H5.11
Hydrophobic ICL3 I 589 - G.S6 Y 347 G.S6.02
Van-der-waals ICL3 I 589 - G.S6 Y 347 G.S6.02
Ionic ICL3 K 593 - G.hgh4 E 309 G.hgh4.12
Polar ICL3 K 593 - G.hgh4 E 309 G.hgh4.12
Hydrophobic ICL3 K 593 - G.hgh4 E 309 G.hgh4.12
Van-der-waals ICL3 K 593 - G.hgh4 E 309 G.hgh4.12
Polar TM3 G 501 3x57 G.H5 H 374 G.H5.19
Hydrophobic TM3 G 501 3x57 G.H5 H 374 G.H5.19
Van-der-waals TM3 G 501 3x57 G.H5 H 374 G.H5.19
Hydrophobic TM6 R 602 6x37 G.H5 L 381 G.H5.26
Van-der-waals TM6 R 602 6x37 G.H5 L 381 G.H5.26
Hydrophobic ICL1 I 435 - G.H5 H 374 G.H5.19
Van-der-waals ICL1 I 435 - G.H5 H 374 G.H5.19
Hydrophobic TM4 M 510 4x38 G.HN L 37 G.HN.52
Van-der-waals TM4 M 510 4x38 G.HN L 37 G.HN.52
Polar TM3 I 502 3x58 G.H5 Q 371 G.H5.16
Hydrophobic TM3 I 502 3x58 G.H5 Q 371 G.H5.16
Van-der-waals TM3 I 502 3x58 G.H5 Q 371 G.H5.16
Ionic TM5 R 586 5x63 G.H5 D 368 G.H5.13
Hydrophobic ICL3 S 588 - G.h4s6 Y 345 G.h4s6.20
Polar TM5 R 586 5x63 G.H5 R 372 G.H5.17
Van-der-waals TM5 R 586 5x63 G.H5 R 372 G.H5.17
Hydrophobic TM2 R 439 2x46 G.H5 Y 378 G.H5.23
Van-der-waals TM2 R 439 2x46 G.H5 Y 378 G.H5.23
Hydrophobic ICL3 G 590 - G.H4 L 333 G.H4.16
Hydrophobic ICL1 I 435 - G.H5 Q 377 G.H5.22
Van-der-waals ICL1 I 435 - G.H5 Q 377 G.H5.22
Hydrophobic ICL2 F 506 - G.S3 F 206 G.S3.03
Hydrophobic TM3 I 502 3x58 G.H5 L 375 G.H5.20
Polar TM3 I 498 3x54 G.H5 Y 378 G.H5.23
Hydrophobic TM3 I 498 3x54 G.H5 Y 378 G.H5.23
Van-der-waals TM3 I 498 3x54 G.H5 Y 378 G.H5.23
Polar TM3 L 497 3x53 G.H5 Y 378 G.H5.23
Hydrophobic TM3 L 497 3x53 G.H5 Y 378 G.H5.23
Van-der-waals TM3 L 497 3x53 G.H5 Y 378 G.H5.23
Hydrophobic ICL3 I 589 - G.S6 P 348 G.S6.03
Van-der-waals ICL3 I 589 - G.S6 P 348 G.S6.03
Polar TM6 K 605 6x40 G.H5 E 379 G.H5.24
Hydrophobic TM6 K 605 6x40 G.H5 E 379 G.H5.24
Van-der-waals TM6 K 605 6x40 G.H5 E 379 G.H5.24
Aromatic ICL2 F 506 - G.H5 F 363 G.H5.08
Hydrophobic ICL2 F 506 - G.H5 F 363 G.H5.08
Van-der-waals ICL2 F 506 - G.H5 F 363 G.H5.08
Hydrophobic TM3 I 502 3x58 G.H5 H 374 G.H5.19
Hydrophobic TM5 V 580 5x57 G.H5 L 375 G.H5.20
Ionic H8 H 657 8x48 G.H5 E 379 G.H5.24
Polar H8 H 657 8x48 G.H5 E 379 G.H5.24
Hydrophobic H8 H 657 8x48 G.H5 E 379 G.H5.24
Van-der-waals H8 H 657 8x48 G.H5 E 379 G.H5.24
Hydrophobic ICL2 I 505 - G.H5 Q 371 G.H5.16
Van-der-waals ICL2 I 505 - G.H5 Q 371 G.H5.16
Hydrophobic ICL1 I 435 - G.H5 Y 378 G.H5.23
Van-der-waals ICL1 I 435 - G.H5 Y 378 G.H5.23
Ionic ICL1 E 434 - G.hns1 K 40 G.hns1.02
Polar ICL1 E 434 - G.hns1 K 40 G.hns1.02
Hydrophobic ICL1 E 434 - G.hns1 K 40 G.hns1.02
Van-der-waals ICL1 E 434 - G.hns1 K 40 G.hns1.02
Ionic TM2 R 439 2x46 G.H5 E 379 G.H5.24
Hydrophobic TM2 R 439 2x46 G.H5 E 379 G.H5.24
Van-der-waals TM2 R 439 2x46 G.H5 E 379 G.H5.24
Hydrophobic TM5 T 584 5x61 G.H5 L 375 G.H5.20
Hydrophobic ICL2 I 505 - G.H5 I 370 G.H5.15
Van-der-waals ICL2 I 505 - G.H5 I 370 G.H5.15
Polar TM6 K 605 6x40 G.H5 L 381 G.H5.26
Hydrophobic TM6 L 610 6x45 G.H5 L 380 G.H5.25
Hydrophobic TM5 V 580 5x57 G.H5 L 380 G.H5.25
Hydrophobic ICL2 F 506 - G.H5 R 367 G.H5.12
Ionic H8 K 658 8x49 G.H5 E 379 G.H5.24
Polar H8 K 658 8x49 G.H5 E 379 G.H5.24
Polar TM3 L 497 3x53 G.H5 H 374 G.H5.19
Hydrophobic TM3 L 497 3x53 G.H5 H 374 G.H5.19
Van-der-waals TM3 L 497 3x53 G.H5 H 374 G.H5.19
Polar TM2 R 439 2x46 G.H5 Q 377 G.H5.22
Hydrophobic TM2 R 439 2x46 G.H5 Q 377 G.H5.22
Van-der-waals TM2 R 439 2x46 G.H5 Q 377 G.H5.22
Polar TM5 N 583 5x60 G.H5 Q 371 G.H5.16