G13 - ADGRG1 complex model

GPCR CLASS (FAMILY)

B2 (Adhesion)

SPECIES

Homo sapiens

G PROTEIN FAMILY

G12/13

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 83.5

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.8
iPTM Score: 0.8
PAE mean: 13.9


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic C-term L 681 - G.H3 T 274 G.H3.11
Van-der-waals C-term L 681 - G.H3 T 274 G.H3.11
Hydrophobic TM3 V 504 3x58 G.H5 L 374 G.H5.23
Hydrophobic ICL2 F 508 - G.H5 K 363 G.H5.12
Van-der-waals ICL2 F 508 - G.H5 K 363 G.H5.12
Hydrophobic ICL2 F 508 - G.S1 V 49 G.S1.02
Van-der-waals ICL2 F 508 - G.S1 V 49 G.S1.02
Hydrophobic ICL2 V 507 - G.H5 L 367 G.H5.16
Van-der-waals ICL2 V 507 - G.H5 L 367 G.H5.16
Polar C-term S 674 - G.H3 R 279 G.H3.16
Hydrophobic TM3 L 500 3x54 G.H5 L 374 G.H5.23
Hydrophobic C-term I 683 - G.H2 K 231 G.H2.05
Hydrophobic TM6 H 608 6x38 G.H5 M 375 G.H5.24
Van-der-waals TM5 R 600 5x65 G.H5 K 372 G.H5.21
Hydrophobic TM2 D 440 2x44 G.H5 Q 373 G.H5.22
Van-der-waals TM2 D 440 2x44 G.H5 Q 373 G.H5.22
Aromatic ICL2 F 508 - G.H5 F 359 G.H5.08
Hydrophobic ICL2 F 508 - G.H5 F 359 G.H5.08
Van-der-waals ICL2 F 508 - G.H5 F 359 G.H5.08
Hydrophobic ICL2 P 513 - G.HN T 43 G.HN.52
Hydrophobic C-term L 681 - G.H2 F 234 G.H2.08
Van-der-waals C-term L 681 - G.H2 F 234 G.H2.08
Hydrophobic TM5 M 592 5x57 G.H5 L 374 G.H5.23
Hydrophobic ICL2 Y 511 - G.hns1 K 46 G.hns1.02
Van-der-waals ICL2 Y 511 - G.hns1 K 46 G.hns1.02
Hydrophobic TM2 T 442 2x46 G.H5 L 374 G.H5.23
Ionic TM5 R 598 5x63 G.H5 D 364 G.H5.13
Polar TM5 R 598 5x63 G.H5 D 364 G.H5.13
Hydrophobic TM5 R 598 5x63 G.H5 D 364 G.H5.13
Van-der-waals TM5 R 598 5x63 G.H5 D 364 G.H5.13
Hydrophobic TM5 M 592 5x57 G.H5 L 371 G.H5.20
Hydrophobic ICL2 V 507 - G.H5 K 363 G.H5.12
Van-der-waals ICL2 V 507 - G.H5 K 363 G.H5.12
Hydrophobic TM5 L 599 5x64 G.H5 L 371 G.H5.20
Van-der-waals TM5 L 599 5x64 G.H5 L 371 G.H5.20
Polar C-term N 675 - G.H3 R 279 G.H3.16
Van-der-waals C-term N 675 - G.H3 R 279 G.H3.16
Hydrophobic TM5 L 599 5x64 G.H5 L 367 G.H5.16
Van-der-waals TM5 L 599 5x64 G.H5 L 367 G.H5.16
Hydrophobic TM7 M 661 7x60 G.H5 L 376 G.H5.25
Hydrophobic C-term I 683 - G.H2 R 230 G.H2.04
Polar TM5 R 600 5x65 G.H5 H 368 G.H5.17
Hydrophobic TM5 R 600 5x65 G.H5 H 368 G.H5.17
Van-der-waals TM5 R 600 5x65 G.H5 H 368 G.H5.17
Hydrophobic TM3 V 504 3x58 G.H5 L 367 G.H5.16
Van-der-waals TM3 V 504 3x58 G.H5 L 367 G.H5.16
Hydrophobic ICL2 P 513 - G.hns1 R 47 G.hns1.03
Hydrophobic TM3 V 504 3x58 G.H5 L 371 G.H5.20
Polar TM5 R 600 5x65 G.H5 Q 377 G.H5.26
Hydrophobic TM5 R 600 5x65 G.H5 M 375 G.H5.24
Van-der-waals TM5 R 600 5x65 G.H5 M 375 G.H5.24
Polar TM3 L 503 3x57 G.H5 N 370 G.H5.19
Hydrophobic TM3 L 503 3x57 G.H5 N 370 G.H5.19
Van-der-waals TM3 L 503 3x57 G.H5 N 370 G.H5.19
Hydrophobic TM5 L 599 5x64 G.H5 H 368 G.H5.17
Hydrophobic ICL2 F 508 - G.S3 V 216 G.S3.01
Van-der-waals ICL2 F 508 - G.S3 V 216 G.S3.01
Hydrophobic ICL2 T 510 - G.H5 N 370 G.H5.19
Hydrophobic TM5 L 599 5x64 G.H5 D 364 G.H5.13
Hydrophobic TM6 T 611 6x41 G.H5 M 375 G.H5.24
Van-der-waals TM6 T 611 6x41 G.H5 M 375 G.H5.24
Hydrophobic TM7 Y 658 7x57 G.H5 L 376 G.H5.25
Van-der-waals TM7 M 661 7x60 G.H5 M 375 G.H5.24
Hydrophobic C-term A 665 - G.H5 Q 377 G.H5.26
Polar TM3 V 505 3x59 G.H5 K 363 G.H5.12
Van-der-waals TM3 V 505 3x59 G.H5 K 363 G.H5.12
Polar ICL2 Y 511 - G.hns1 R 47 G.hns1.03
Hydrophobic ICL2 Y 511 - G.hns1 R 47 G.hns1.03
Van-der-waals ICL2 Y 511 - G.hns1 R 47 G.hns1.03
Polar ICL2 Y 511 - G.HN T 43 G.HN.52
Hydrophobic ICL2 Y 511 - G.HN T 43 G.HN.52
Van-der-waals ICL2 Y 511 - G.HN T 43 G.HN.52
Hydrophobic C-term A 665 - G.H5 L 376 G.H5.25
Van-der-waals C-term A 665 - G.H5 L 376 G.H5.25
Hydrophobic TM5 Q 595 5x60 G.H5 L 367 G.H5.16
Hydrophobic TM7 W 657 7x56 G.H5 L 376 G.H5.25
Hydrophobic ICL2 F 508 - G.H5 V 362 G.H5.11
Van-der-waals ICL2 F 508 - G.H5 V 362 G.H5.11
Hydrophobic TM2 I 443 2x47 G.H5 L 376 G.H5.25
Hydrophobic ICL2 V 507 - G.H5 I 366 G.H5.15
Van-der-waals ICL2 V 507 - G.H5 I 366 G.H5.15
Polar ICL2 V 507 - G.H5 N 370 G.H5.19
Hydrophobic ICL2 F 508 - G.H5 I 366 G.H5.15
Van-der-waals ICL2 F 508 - G.H5 I 366 G.H5.15
Hydrophobic ICL2 F 508 - G.S3 F 218 G.S3.03
Hydrophobic TM5 I 596 5x61 G.H5 L 371 G.H5.20
Polar C-term S 678 - G.H3 R 279 G.H3.16
Hydrophobic TM3 L 503 3x57 G.H5 L 374 G.H5.23
Van-der-waals TM3 L 503 3x57 G.H5 L 374 G.H5.23