Gt1 - CCR5 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 86.5

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.8
iPTM Score: 0.8
PAE mean: 11.5


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic C-term Y 339 - G.h2s4 E 212 G.h2s4.02
Van-der-waals C-term Y 339 - G.h2s4 E 212 G.h2s4.02
Polar ICL3 R 225 - G.H5 D 337 G.H5.13
Van-der-waals ICL3 R 225 - G.H5 D 337 G.H5.13
Hydrophobic ICL2 V 134 34x51 G.S3 L 190 G.S3.01
Van-der-waals ICL2 V 134 34x51 G.S3 L 190 G.S3.01
Hydrophobic C-term L 352 - G.H3 S 248 G.H3.11
Van-der-waals C-term L 352 - G.H3 S 248 G.H3.11
Hydrophobic C-term I 348 - G.H3 Y 254 G.H3.17
Polar C-term Q 346 - G.H3 R 253 G.H3.16
Van-der-waals C-term Q 346 - G.H3 R 253 G.H3.16
Hydrophobic TM3 A 129 3x53 G.H5 C 347 G.H5.23
Van-der-waals TM3 A 129 3x53 G.H5 C 347 G.H5.23
Hydrophobic ICL2 V 134 34x51 G.s2s3 D 189 G.s2s3.02
Hydrophobic TM6 I 240 6x40 G.H5 L 349 G.H5.25
Polar TM5 C 224 5x68 G.H5 D 337 G.H5.13
Hydrophobic TM5 C 224 5x68 G.H5 D 337 G.H5.13
Van-der-waals TM5 C 224 5x68 G.H5 D 337 G.H5.13
Polar ICL2 R 140 34x57 G.H5 N 343 G.H5.19
Polar H8 G 301 8x47 G.H5 G 348 G.H5.24
Hydrophobic H8 G 301 8x47 G.H5 G 348 G.H5.24
Hydrophobic C-term L 352 - G.H3 L 245 G.H3.08
Ionic ICL2 K 138 34x55 G.s2s3 D 189 G.s2s3.02
Polar ICL2 K 138 34x55 G.s2s3 D 189 G.s2s3.02
Hydrophobic ICL3 R 225 - G.S6 Y 316 G.S6.02
Ionic H8 K 303 8x49 G.H5 E 342 G.H5.18
Polar H8 K 303 8x49 G.H5 E 342 G.H5.18
Hydrophobic H8 K 303 8x49 G.H5 E 342 G.H5.18
Van-der-waals H8 K 303 8x49 G.H5 E 342 G.H5.18
Polar TM4 T 143 4x40 G.HN K 20 G.HN.48
Van-der-waals TM4 T 143 4x40 G.HN K 20 G.HN.48
Hydrophobic ICL2 A 133 34x50 G.H5 T 336 G.H5.12
Hydrophobic TM3 R 126 3x50 G.H5 L 349 G.H5.25
Hydrophobic TM3 V 130 3x54 G.H5 L 344 G.H5.20
Van-der-waals TM3 V 130 3x54 G.H5 L 344 G.H5.20
Hydrophobic ICL2 L 137 34x54 G.S3 L 190 G.S3.01
Polar C-term Y 339 - G.S1 K 31 G.S1.03
Polar TM6 R 232 6x32 G.H5 F 350 G.H5.26
Hydrophobic TM6 R 232 6x32 G.H5 F 350 G.H5.26
Van-der-waals TM6 R 232 6x32 G.H5 F 350 G.H5.26
Van-der-waals TM6 A 233 6x33 G.H5 L 349 G.H5.25
Polar H8 E 302 8x48 G.H5 F 350 G.H5.26
Hydrophobic H8 E 302 8x48 G.H5 F 350 G.H5.26
Van-der-waals H8 E 302 8x48 G.H5 F 350 G.H5.26
Hydrophobic C-term S 349 - G.H2 K 205 G.H2.05
Polar ICL2 R 140 34x57 G.H5 C 347 G.H5.23
Hydrophobic ICL2 R 140 34x57 G.H5 C 347 G.H5.23
Van-der-waals ICL2 R 140 34x57 G.H5 C 347 G.H5.23
Hydrophobic ICL3 R 225 - G.H5 F 330 G.H5.06
Van-der-waals ICL3 R 225 - G.H5 F 330 G.H5.06
Hydrophobic ICL2 L 137 34x54 G.H5 I 339 G.H5.15
Hydrophobic TM5 L 221 5x65 G.H5 I 340 G.H5.16
Polar TM3 A 129 3x53 G.H5 N 343 G.H5.19
Hydrophobic TM3 A 129 3x53 G.H5 N 343 G.H5.19
Van-der-waals TM3 A 129 3x53 G.H5 N 343 G.H5.19
Hydrophobic TM5 L 221 5x65 G.H5 L 344 G.H5.20
Van-der-waals TM5 L 221 5x65 G.H5 L 344 G.H5.20
Hydrophobic TM3 V 130 3x54 G.H5 I 340 G.H5.16
Van-der-waals TM3 V 130 3x54 G.H5 I 340 G.H5.16
Polar ICL3 R 225 - G.S6 S 317 G.S6.03
Van-der-waals ICL3 R 225 - G.S6 S 317 G.S6.03
Hydrophobic H8 K 303 8x49 G.H5 K 345 G.H5.21
Van-der-waals H8 K 303 8x49 G.H5 K 345 G.H5.21
Hydrophobic C-term I 348 - G.h2s4 F 211 G.h2s4.01
Hydrophobic TM2 T 65 2x39 G.H5 C 347 G.H5.23
Hydrophobic TM6 K 229 6x29 G.H5 F 350 G.H5.26
Van-der-waals TM6 K 229 6x29 G.H5 F 350 G.H5.26
Hydrophobic ICL2 A 133 34x50 G.H5 I 340 G.H5.16
Van-der-waals ICL2 A 133 34x50 G.H5 I 340 G.H5.16
Hydrophobic TM6 L 236 6x36 G.H5 L 349 G.H5.25
Hydrophobic C-term I 348 - G.H3 H 252 G.H3.15
Hydrophobic TM5 T 220 5x64 G.H5 I 340 G.H5.16
Polar TM6 N 226 6x26 G.h4s6 E 314 G.h4s6.12
Hydrophobic TM6 N 226 6x26 G.h4s6 E 314 G.h4s6.12
Van-der-waals TM6 N 226 6x26 G.h4s6 E 314 G.h4s6.12
Hydrophobic TM5 C 224 5x68 G.H5 I 340 G.H5.16
Hydrophobic ICL2 L 137 34x54 G.hns1 R 28 G.hns1.03
Hydrophobic ICL2 K 138 34x55 G.hns1 R 28 G.hns1.03
Van-der-waals ICL2 K 138 34x55 G.hns1 R 28 G.hns1.03
Hydrophobic C-term I 348 - G.H2 I 208 G.H2.08
Van-der-waals C-term I 348 - G.H2 I 208 G.H2.08
Hydrophobic TM6 L 236 6x36 G.H5 G 348 G.H5.24
Van-der-waals TM6 L 236 6x36 G.H5 G 348 G.H5.24
Hydrophobic TM6 A 233 6x33 G.H5 L 344 G.H5.20
Hydrophobic TM6 I 237 6x37 G.H5 L 349 G.H5.25
Ionic H8 K 303 8x49 G.H5 D 346 G.H5.22
Polar H8 K 303 8x49 G.H5 D 346 G.H5.22
Hydrophobic H8 K 303 8x49 G.H5 D 346 G.H5.22
Van-der-waals H8 K 303 8x49 G.H5 D 346 G.H5.22
Hydrophobic ICL2 A 133 34x50 G.H5 I 339 G.H5.15
Polar C-term T 340 - G.h2s4 E 212 G.h2s4.02
Van-der-waals C-term T 340 - G.h2s4 E 212 G.h2s4.02
Hydrophobic ICL2 V 134 34x51 G.H5 F 332 G.H5.08
Polar TM3 R 126 3x50 G.H5 C 347 G.H5.23
Hydrophobic TM3 R 126 3x50 G.H5 C 347 G.H5.23
Van-der-waals TM3 R 126 3x50 G.H5 C 347 G.H5.23