G11 - GIP receptor complex model

GPCR CLASS (FAMILY)

B1 (Secretin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gq/11

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 85.7

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.7
PAE mean: 11.2


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, Gβ, Gγ, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Polar ICL2 S 251 - G.hns1 R 38 G.hns1.03
Hydrophobic ICL2 S 251 - G.hns1 R 38 G.hns1.03
Van-der-waals ICL2 S 251 - G.hns1 R 38 G.hns1.03
Hydrophobic C-term L 462 - G.H3 W 263 G.H3.17
Hydrophobic TM5 L 321 5x61 G.H5 L 353 G.H5.20
Hydrophobic C-term L 451 - G.h2s4 F 220 G.h2s4.01
Ionic TM2 R 169 2x46 G.H5 E 355 G.H5.22
Polar TM2 R 169 2x46 G.H5 E 355 G.H5.22
Hydrophobic TM2 R 169 2x46 G.H5 E 355 G.H5.22
Van-der-waals TM2 R 169 2x46 G.H5 E 355 G.H5.22
Polar TM6 S 342 6x41 G.H5 L 358 G.H5.25
Hydrophobic TM6 S 342 6x41 G.H5 L 358 G.H5.25
Van-der-waals TM6 S 342 6x41 G.H5 L 358 G.H5.25
Hydrophobic TM3 L 245 3x58 G.H5 L 353 G.H5.20
Van-der-waals TM3 L 245 3x58 G.H5 L 353 G.H5.20
Aromatic TM2 R 169 2x46 G.H5 Y 356 G.H5.23
Hydrophobic TM2 R 169 2x46 G.H5 Y 356 G.H5.23
Van-der-waals TM2 R 169 2x46 G.H5 Y 356 G.H5.23
Hydrophobic C-term P 452 - G.H2 R 214 G.H2.05
Hydrophobic C-term S 448 - G.H3 A 253 G.H3.07
Hydrophobic TM3 L 241 3x54 G.H5 Y 356 G.H5.23
Van-der-waals TM3 L 241 3x54 G.H5 Y 356 G.H5.23
Hydrophobic TM3 L 245 3x58 G.H5 N 352 G.H5.19
Ionic TM5 K 324 5x64 G.H5 D 346 G.H5.13
Polar TM5 K 324 5x64 G.H5 D 346 G.H5.13
Hydrophobic TM5 K 324 5x64 G.H5 D 346 G.H5.13
Van-der-waals TM5 K 324 5x64 G.H5 D 346 G.H5.13
Polar TM5 R 328 5x68 G.H5 Q 350 G.H5.17
Hydrophobic TM5 R 328 5x68 G.H5 Q 350 G.H5.17
Van-der-waals TM5 R 328 5x68 G.H5 Q 350 G.H5.17
Hydrophobic TM2 H 173 2x50 G.H5 Y 356 G.H5.23
Hydrophobic C-term L 451 - G.H2 R 213 G.H2.04
Polar H8 N 396 8x47 G.H5 N 357 G.H5.24
Polar TM3 L 244 3x57 G.H5 N 352 G.H5.19
Hydrophobic TM3 L 244 3x57 G.H5 N 352 G.H5.19
Van-der-waals TM3 L 244 3x57 G.H5 N 352 G.H5.19
Hydrophobic TM5 I 320 5x60 G.H5 L 349 G.H5.16
Hydrophobic ICL2 V 248 - G.S3 I 199 G.S3.01
Van-der-waals ICL2 V 248 - G.S3 I 199 G.S3.01
Hydrophobic TM3 Y 240 3x53 G.H5 Y 356 G.H5.23
Van-der-waals TM3 Y 240 3x53 G.H5 Y 356 G.H5.23
Hydrophobic TM6 L 346 6x45 G.H5 L 358 G.H5.25
Hydrophobic C-term L 451 - G.H3 L 254 G.H3.08
Van-der-waals C-term L 451 - G.H3 L 254 G.H3.08
Polar C-term T 450 - G.H2 R 210 G.H2.01
Hydrophobic C-term L 451 - G.H3 Y 261 G.H3.15
Polar C-term P 454 - G.H3 Y 261 G.H3.15
Hydrophobic C-term P 454 - G.H3 Y 261 G.H3.15
Polar C-term L 462 - G.h3s5 N 266 G.h3s5.02
Hydrophobic TM7 Y 392 7x57 G.H5 Y 356 G.H5.23
Hydrophobic TM3 L 245 3x58 G.H5 L 349 G.H5.16
Van-der-waals TM3 L 245 3x58 G.H5 L 349 G.H5.16
Hydrophobic ICL2 V 248 - G.H5 I 348 G.H5.15
Hydrophobic C-term L 451 - G.H2 W 216 G.H2.07
Hydrophobic TM3 L 244 3x57 G.H5 Y 356 G.H5.23
Hydrophobic ICL2 G 249 - G.S3 I 199 G.S3.01
Van-der-waals ICL2 G 249 - G.S3 I 199 G.S3.01
Polar C-term T 450 - G.H2 R 214 G.H2.05
Hydrophobic C-term T 450 - G.H2 R 214 G.H2.05
Van-der-waals C-term T 450 - G.H2 R 214 G.H2.05
Polar C-term P 452 - G.H3 Y 261 G.H3.15
Van-der-waals C-term P 452 - G.H3 Y 261 G.H3.15
Hydrophobic C-term L 451 - G.H3 T 257 G.H3.11
Van-der-waals C-term L 451 - G.H3 T 257 G.H3.11
Hydrophobic TM6 L 349 6x48 G.H5 Y 356 G.H5.23
Hydrophobic TM5 K 324 5x64 G.H5 L 349 G.H5.16
Van-der-waals TM5 K 324 5x64 G.H5 L 349 G.H5.16
Polar TM5 R 328 5x68 G.h4s6 D 321 G.h4s6.12
Van-der-waals TM5 R 328 5x68 G.h4s6 D 321 G.h4s6.12
Hydrophobic C-term L 451 - G.H3 I 258 G.H3.12
Hydrophobic C-term P 452 - G.H2 I 217 G.H2.08
Ionic ICL2 E 253 - G.hns1 R 37 G.hns1.02
Polar ICL2 E 253 - G.hns1 R 37 G.hns1.02
Hydrophobic ICL2 E 253 - G.hns1 R 37 G.hns1.02
Van-der-waals ICL2 E 253 - G.hns1 R 37 G.hns1.02
Hydrophobic TM5 R 328 5x68 G.h4s6 I 323 G.h4s6.20
Van-der-waals TM5 R 328 5x68 G.h4s6 I 323 G.h4s6.20
Hydrophobic ICL2 V 248 - G.H5 K 345 G.H5.12
Van-der-waals ICL2 V 248 - G.H5 K 345 G.H5.12
Hydrophobic TM5 L 321 5x61 G.H5 V 359 G.H5.26
Polar TM6 R 331 6x30 G.h4s6 S 320 G.h4s6.11