Go - GPR119 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 85.6

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.8
iPTM Score: 0.8
PAE mean: 12.2


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic ICL2 F 111 34x51 G.S3 L 195 G.S3.01
Van-der-waals ICL2 F 111 34x51 G.S3 L 195 G.S3.01
Polar TM6 R 216 6x26 G.h4s6 S 314 G.h4s6.08
Van-der-waals TM6 R 216 6x26 G.h4s6 S 314 G.h4s6.08
Hydrophobic ICL2 P 110 34x50 G.H5 I 344 G.H5.16
Hydrophobic TM3 I 107 3x54 G.H5 I 344 G.H5.16
Hydrophobic ICL2 F 111 34x51 G.H5 T 340 G.H5.12
Van-der-waals ICL2 F 111 34x51 G.H5 T 340 G.H5.12
Hydrophobic ICL2 F 111 34x51 G.H5 I 343 G.H5.15
Hydrophobic TM6 V 227 6x37 G.H5 L 353 G.H5.25
Van-der-waals TM6 V 227 6x37 G.H5 L 353 G.H5.25
Ionic H8 K 284 8x48 G.h3s5 D 262 G.h3s5.02
Hydrophobic TM5 I 191 5x65 G.H5 L 348 G.H5.20
Polar TM6 K 222 6x32 G.H5 Y 354 G.H5.26
Hydrophobic TM6 K 222 6x32 G.H5 Y 354 G.H5.26
Van-der-waals TM6 K 222 6x32 G.H5 Y 354 G.H5.26
Polar ICL2 K 115 34x55 G.s2s3 N 194 G.s2s3.02
Hydrophobic ICL2 K 115 34x55 G.s2s3 N 194 G.s2s3.02
Van-der-waals ICL2 K 115 34x55 G.s2s3 N 194 G.s2s3.02
Hydrophobic TM5 H 195 5x69 G.H5 L 348 G.H5.20
Polar ICL2 L 114 34x54 G.hns1 K 32 G.hns1.03
Van-der-waals ICL2 L 114 34x54 G.hns1 K 32 G.hns1.03
Polar TM3 R 103 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 103 3x50 G.H5 C 351 G.H5.23
Van-der-waals TM3 R 103 3x50 G.H5 C 351 G.H5.23
Hydrophobic ICL2 P 110 34x50 G.H5 I 343 G.H5.15
Van-der-waals ICL2 P 110 34x50 G.H5 I 343 G.H5.15
Hydrophobic TM3 I 107 3x54 G.H5 N 347 G.H5.19
Polar ICL2 K 115 34x55 G.hns1 K 32 G.hns1.03
Van-der-waals ICL2 K 115 34x55 G.hns1 K 32 G.hns1.03
Polar TM6 R 213 6x23 G.h4s6 S 314 G.h4s6.08
Van-der-waals TM6 R 213 6x23 G.h4s6 S 314 G.h4s6.08
Polar ICL2 M 117 34x57 G.hns1 K 32 G.hns1.03
Van-der-waals ICL2 M 117 34x57 G.hns1 K 32 G.hns1.03
Hydrophobic TM5 A 192 5x66 G.H5 L 348 G.H5.20
Hydrophobic TM5 H 195 5x69 G.H5 I 344 G.H5.16
Van-der-waals TM5 H 195 5x69 G.H5 I 344 G.H5.16
Hydrophobic TM5 I 199 5x73 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM5 I 199 5x73 G.h4s6 E 318 G.h4s6.12
Polar TM6 R 213 6x23 G.h4s6 N 312 G.h4s6.02
Hydrophobic TM6 R 213 6x23 G.h4s6 N 312 G.h4s6.02
Van-der-waals TM6 R 213 6x23 G.h4s6 N 312 G.h4s6.02
Polar TM6 A 223 6x33 G.H5 L 353 G.H5.25
Hydrophobic TM6 A 223 6x33 G.H5 L 353 G.H5.25
Van-der-waals TM6 A 223 6x33 G.H5 L 353 G.H5.25
Polar TM5 G 206 5x80 G.H4 E 309 G.H4.16
Van-der-waals TM5 G 206 5x80 G.H4 E 309 G.H4.16
Hydrophobic ICL3 A 209 - G.H4 A 306 G.H4.13
Van-der-waals ICL3 A 209 - G.H4 A 306 G.H4.13
Hydrophobic TM3 I 107 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 I 107 3x54 G.H5 L 348 G.H5.20
Ionic TM5 H 195 5x69 G.H5 D 341 G.H5.13
Hydrophobic TM5 H 195 5x69 G.H5 D 341 G.H5.13
Van-der-waals TM5 H 195 5x69 G.H5 D 341 G.H5.13
Hydrophobic TM3 I 107 3x54 G.H5 L 353 G.H5.25
Ionic ICL1 D 37 - G.HN K 24 G.HN.48
Hydrophobic ICL1 D 37 - G.HN K 24 G.HN.48
Van-der-waals ICL1 D 37 - G.HN K 24 G.HN.48
Polar TM3 A 106 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 A 106 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 A 106 3x53 G.H5 N 347 G.H5.19
Hydrophobic ICL2 L 114 34x54 G.S3 L 195 G.S3.01
Van-der-waals ICL2 L 114 34x54 G.S3 L 195 G.S3.01
Polar TM6 T 226 6x36 G.H5 G 352 G.H5.24
Hydrophobic TM6 T 226 6x36 G.H5 G 352 G.H5.24
Van-der-waals TM6 T 226 6x36 G.H5 G 352 G.H5.24
Hydrophobic TM5 M 188 5x62 G.H5 L 353 G.H5.25
Polar TM6 R 213 6x23 G.h4s6 R 313 G.h4s6.03
Hydrophobic TM6 R 213 6x23 G.h4s6 R 313 G.h4s6.03
Van-der-waals TM6 R 213 6x23 G.h4s6 R 313 G.h4s6.03
Polar TM6 R 216 6x26 G.h4s6 P 315 G.h4s6.09
Hydrophobic TM6 R 216 6x26 G.h4s6 P 315 G.h4s6.09
Van-der-waals TM6 R 216 6x26 G.h4s6 P 315 G.h4s6.09
Hydrophobic TM5 I 199 5x73 G.H5 Y 354 G.H5.26
Van-der-waals TM5 I 199 5x73 G.H5 Y 354 G.H5.26
Hydrophobic TM3 I 107 3x54 G.H5 C 351 G.H5.23
Van-der-waals TM3 I 107 3x54 G.H5 C 351 G.H5.23
Hydrophobic TM5 S 196 5x70 G.H5 Y 354 G.H5.26
Hydrophobic TM6 T 226 6x36 G.H5 L 353 G.H5.25
Hydrophobic TM5 M 202 5x76 G.S6 Y 320 G.S6.02
Hydrophobic TM5 I 191 5x65 G.H5 I 344 G.H5.16
Hydrophobic ICL1 D 37 - G.HN I 28 G.HN.52
Van-der-waals ICL1 D 37 - G.HN I 28 G.HN.52