G13 - GPR22 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

G12/13

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 73.7

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.6
iPTM Score: 0.4
PAE mean: 19.9


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic H8 K 373 8x49 G.H5 Q 373 G.H5.22
Polar ICL3 R 296 - G.H4 N 332 G.H4.17
Hydrophobic C-term L 426 - H.HA L 106 H.HA.29
Van-der-waals C-term L 426 - H.HA L 106 H.HA.29
Ionic TM5 R 245 5x72 G.H5 D 364 G.H5.13
Polar TM5 R 245 5x72 G.H5 D 364 G.H5.13
Hydrophobic TM5 R 245 5x72 G.H5 D 364 G.H5.13
Van-der-waals TM5 R 245 5x72 G.H5 D 364 G.H5.13
Hydrophobic H8 R 371 8x47 G.H5 L 376 G.H5.25
Van-der-waals H8 R 371 8x47 G.H5 L 376 G.H5.25
Polar TM2 N 74 2x36 G.hns1 K 46 G.hns1.02
Van-der-waals TM2 N 74 2x36 G.hns1 K 46 G.hns1.02
Hydrophobic TM6 R 307 6x29 G.H5 M 375 G.H5.24
Van-der-waals TM6 R 307 6x29 G.H5 M 375 G.H5.24
Polar H8 Q 372 8x48 G.H5 L 376 G.H5.25
Hydrophobic H8 Q 372 8x48 G.H5 L 376 G.H5.25
Van-der-waals H8 Q 372 8x48 G.H5 L 376 G.H5.25
Hydrophobic C-term L 426 - H.HA K 105 H.HA.28
Van-der-waals C-term L 426 - H.HA K 105 H.HA.28
Hydrophobic TM5 R 241 5x68 G.H5 L 367 G.H5.16
Van-der-waals TM5 R 241 5x68 G.H5 L 367 G.H5.16
Van-der-waals H8 K 373 8x49 G.H5 Q 377 G.H5.26
Hydrophobic TM7 A 368 7x54 G.H5 L 376 G.H5.25
Hydrophobic ICL2 A 148 34x51 G.H5 I 366 G.H5.15
Hydrophobic TM6 V 311 6x33 G.H5 L 371 G.H5.20
Hydrophobic C-term W 405 - G.H3 I 271 G.H3.08
Hydrophobic ICL2 N 149 34x52 G.S3 V 216 G.S3.01
Van-der-waals TM3 S 144 3x54 G.H5 L 374 G.H5.23
Hydrophobic TM4 T 153 4x38 G.HN T 43 G.HN.52
Hydrophobic H8 Q 372 8x48 G.H5 Q 377 G.H5.26
Van-der-waals H8 Q 372 8x48 G.H5 Q 377 G.H5.26
Polar ICL2 R 150 34x53 G.H5 Q 373 G.H5.22
Hydrophobic TM3 R 140 3x50 G.H5 L 374 G.H5.23
Van-der-waals TM3 R 140 3x50 G.H5 L 374 G.H5.23
Polar TM6 R 307 6x29 G.H5 H 368 G.H5.17
Hydrophobic TM6 R 307 6x29 G.H5 H 368 G.H5.17
Van-der-waals TM6 R 307 6x29 G.H5 H 368 G.H5.17
Polar ICL2 R 150 34x53 G.H5 N 370 G.H5.19
Hydrophobic ICL2 R 150 34x53 G.H5 N 370 G.H5.19
Van-der-waals ICL2 R 150 34x53 G.H5 N 370 G.H5.19
Hydrophobic TM4 T 153 4x38 G.hns1 R 47 G.hns1.03
Van-der-waals TM4 T 153 4x38 G.hns1 R 47 G.hns1.03
Van-der-waals TM6 R 310 6x32 G.H5 Q 377 G.H5.26
Polar ICL3 T 248 - G.H4 R 320 G.H4.05
Van-der-waals ICL3 T 248 - G.H4 R 320 G.H4.05
Polar ICL2 R 150 34x53 G.hns1 R 47 G.hns1.03
Van-der-waals ICL2 R 150 34x53 G.hns1 R 47 G.hns1.03
Hydrophobic TM3 S 144 3x54 G.H5 L 367 G.H5.16
Van-der-waals TM3 S 144 3x54 G.H5 L 367 G.H5.16
Hydrophobic ICL2 P 147 34x50 G.H5 I 366 G.H5.15
Van-der-waals ICL2 P 147 34x50 G.H5 I 366 G.H5.15
Hydrophobic TM3 I 143 3x53 G.H5 L 374 G.H5.23
Van-der-waals TM3 I 143 3x53 G.H5 L 374 G.H5.23
Hydrophobic TM7 Y 367 7x53 G.H5 L 376 G.H5.25
Van-der-waals TM7 Y 367 7x53 G.H5 L 376 G.H5.25
Polar C-term L 426 - G.s4h3 R 260 G.s4h3.12
Van-der-waals C-term L 426 - G.s4h3 R 260 G.s4h3.12
Hydrophobic ICL3 K 253 - G.H4 K 324 G.H4.09
Hydrophobic C-term I 406 - G.H2 K 231 G.H2.05
Polar ICL2 N 149 34x52 G.s2s3 N 215 G.s2s3.02
Hydrophobic ICL2 N 149 34x52 G.s2s3 N 215 G.s2s3.02
Van-der-waals ICL2 N 149 34x52 G.s2s3 N 215 G.s2s3.02
Hydrophobic C-term P 428 - G.s4h3 R 260 G.s4h3.12
Polar C-term V 427 - G.s4h3 R 260 G.s4h3.12
Hydrophobic ICL2 P 147 34x50 G.H5 K 363 G.H5.12
Van-der-waals ICL2 P 147 34x50 G.H5 K 363 G.H5.12
Hydrophobic ICL3 R 300 - G.H4 R 331 G.H4.16
Van-der-waals ICL3 R 300 - G.H4 R 331 G.H4.16
Hydrophobic ICL2 P 147 34x50 G.H5 L 367 G.H5.16
Hydrophobic TM5 L 238 5x65 G.H5 L 371 G.H5.20
Van-der-waals TM5 L 238 5x65 G.H5 L 371 G.H5.20
Hydrophobic TM6 M 314 6x36 G.H5 L 376 G.H5.25
Ionic TM5 R 245 5x72 G.H5 D 361 G.H5.10
Polar TM5 R 245 5x72 G.H5 D 361 G.H5.10
Hydrophobic TM5 R 245 5x72 G.H5 D 361 G.H5.10
Van-der-waals TM5 R 245 5x72 G.H5 D 361 G.H5.10
Polar TM5 R 245 5x72 G.S6 Y 343 G.S6.02
Aromatic TM5 R 245 5x72 G.S6 Y 343 G.S6.02
Hydrophobic TM5 R 245 5x72 G.S6 Y 343 G.S6.02
Van-der-waals TM5 R 245 5x72 G.S6 Y 343 G.S6.02
Hydrophobic TM6 V 311 6x33 G.H5 M 375 G.H5.24
Van-der-waals TM6 V 311 6x33 G.H5 M 375 G.H5.24
Polar H8 R 371 8x47 G.H5 Q 373 G.H5.22
Van-der-waals H8 R 371 8x47 G.H5 Q 373 G.H5.22
Polar ICL2 N 149 34x52 G.s2s3 K 214 G.s2s3.01
Polar C-term V 427 - H.HA K 105 H.HA.28
Hydrophobic C-term V 427 - H.HA K 105 H.HA.28
Van-der-waals C-term V 427 - H.HA K 105 H.HA.28
Hydrophobic TM7 T 370 7x56 G.H5 L 376 G.H5.25
Van-der-waals TM7 T 370 7x56 G.H5 L 376 G.H5.25
Van-der-waals TM7 L 366 7x52 G.H5 L 376 G.H5.25
Hydrophobic C-term T 432 - H.hbhc R 128 H.hbhc.01
Van-der-waals C-term T 432 - H.hbhc R 128 H.hbhc.01
Hydrophobic ICL2 A 148 34x51 G.S3 V 216 G.S3.01
Polar C-term W 405 - G.H3 T 274 G.H3.11
Hydrophobic C-term W 405 - G.H3 T 274 G.H3.11
Van-der-waals C-term W 405 - G.H3 T 274 G.H3.11
Hydrophobic C-term W 405 - G.H3 N 270 G.H3.07
Van-der-waals C-term W 405 - G.H3 N 270 G.H3.07
Hydrophobic C-term K 424 - H.HA L 106 H.HA.29
Polar ICL2 P 147 34x50 G.H5 N 370 G.H5.19
Van-der-waals ICL2 P 147 34x50 G.H5 N 370 G.H5.19
Polar TM3 I 143 3x53 G.H5 N 370 G.H5.19
Hydrophobic TM3 I 143 3x53 G.H5 N 370 G.H5.19
Van-der-waals TM3 I 143 3x53 G.H5 N 370 G.H5.19
Ionic ICL3 R 296 - G.H4 E 328 G.H4.13
Polar ICL3 R 296 - G.H4 E 328 G.H4.13
Hydrophobic ICL3 R 296 - G.H4 E 328 G.H4.13
Van-der-waals ICL3 R 296 - G.H4 E 328 G.H4.13
Hydrophobic TM6 R 310 6x32 G.H5 M 375 G.H5.24
Van-der-waals TM6 R 310 6x32 G.H5 M 375 G.H5.24
Hydrophobic TM5 R 241 5x68 G.H5 K 363 G.H5.12
Van-der-waals TM5 R 241 5x68 G.H5 K 363 G.H5.12