G15 - GPR4 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gq/11

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 84.5

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.7
PAE mean: 13.1


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, Gβ, Gγ, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic C-term M 357 - G.S2 F 197 G.S2.06
Van-der-waals C-term M 357 - G.S2 F 197 G.S2.06
Polar ICL2 R 129 34x57 G.H5 Y 367 G.H5.19
Hydrophobic ICL2 R 129 34x57 G.H5 Y 367 G.H5.19
Van-der-waals ICL2 R 129 34x57 G.H5 Y 367 G.H5.19
Ionic TM6 E 218 6x29 G.h4s6 R 338 G.h4s6.20
Hydrophobic TM3 V 119 3x54 G.H5 L 364 G.H5.16
Van-der-waals TM3 V 119 3x54 G.H5 L 364 G.H5.16
Hydrophobic C-term V 353 - G.s2s3 Q 200 G.s2s3.01
Van-der-waals C-term V 353 - G.s2s3 Q 200 G.s2s3.01
Hydrophobic ICL2 L 123 34x51 G.H5 R 360 G.H5.12
Hydrophobic ICL2 P 122 34x50 G.H5 V 363 G.H5.15
Hydrophobic TM3 V 119 3x54 G.H5 Y 367 G.H5.19
Hydrophobic TM6 I 222 6x33 G.H5 L 368 G.H5.20
Polar C-term M 357 - G.H1 H 66 G.H1.12
Hydrophobic C-term M 357 - G.H1 H 66 G.H1.12
Van-der-waals C-term M 357 - G.H1 H 66 G.H1.12
Hydrophobic ICL2 P 122 34x50 G.H5 R 360 G.H5.12
Van-der-waals ICL2 P 122 34x50 G.H5 R 360 G.H5.12
Hydrophobic TM3 A 118 3x53 G.H5 Y 367 G.H5.19
Van-der-waals TM3 A 118 3x53 G.H5 Y 367 G.H5.19
Hydrophobic C-term L 355 - G.H1 H 66 G.H1.12
Van-der-waals C-term L 355 - G.H1 H 66 G.H1.12
Hydrophobic ICL2 L 123 34x51 G.H5 V 363 G.H5.15
Van-der-waals ICL2 L 123 34x51 G.H5 V 363 G.H5.15
Hydrophobic TM6 L 225 6x36 G.H5 L 373 G.H5.25
Hydrophobic C-term V 353 - G.H5 F 356 G.H5.08
Hydrophobic ICL3 S 211 - G.H5 L 364 G.H5.16
Hydrophobic TM6 K 221 6x32 G.H5 L 373 G.H5.25
Polar TM3 D 114 3x49 G.H5 Y 367 G.H5.19
Hydrophobic C-term M 357 - G.h1ha G 67 G.h1ha.01
Van-der-waals C-term M 357 - G.h1ha G 67 G.h1ha.01
Polar TM7 N 290 7x57 G.H5 I 371 G.H5.23
Van-der-waals TM7 N 290 7x57 G.H5 I 371 G.H5.23
Hydrophobic ICL3 S 213 - G.H5 A 365 G.H5.17
Polar TM7 N 290 7x57 G.H5 N 372 G.H5.24
Hydrophobic TM7 N 290 7x57 G.H5 N 372 G.H5.24
Van-der-waals TM7 N 290 7x57 G.H5 N 372 G.H5.24
Polar C-term M 357 - G.S2 S 198 G.S2.07
Hydrophobic C-term M 357 - G.S2 S 198 G.S2.07
Polar C-term V 353 - G.H5 R 353 G.H5.05
Hydrophobic C-term V 353 - G.H5 R 353 G.H5.05
Van-der-waals C-term V 353 - G.H5 R 353 G.H5.05
Polar C-term S 333 - G.h4s6 E 328 G.h4s6.10
Hydrophobic C-term S 333 - G.h4s6 E 328 G.h4s6.10
Van-der-waals C-term S 333 - G.h4s6 E 328 G.h4s6.10
Hydrophobic C-term Q 352 - G.H5 R 353 G.H5.05
Hydrophobic C-term M 357 - G.h1ha A 68 G.h1ha.02
Van-der-waals C-term M 357 - G.h1ha A 68 G.h1ha.02
Hydrophobic ICL3 T 214 - G.H5 L 368 G.H5.20
Van-der-waals ICL3 T 214 - G.H5 L 368 G.H5.20
Hydrophobic ICL2 L 123 34x51 G.H5 F 356 G.H5.08
Van-der-waals ICL2 L 123 34x51 G.H5 F 356 G.H5.08
Ionic TM7 E 291 7x58 G.h4s6 R 335 G.h4s6.17
Polar TM7 E 291 7x58 G.h4s6 R 335 G.h4s6.17
Van-der-waals TM7 E 291 7x58 G.h4s6 R 335 G.h4s6.17
Hydrophobic C-term L 358 - G.S3 N 203 G.S3.02
Van-der-waals C-term L 358 - G.S3 N 203 G.S3.02
Polar ICL2 R 124 34x52 G.s2s3 Q 200 G.s2s3.01
Polar ICL2 R 127 34x55 G.hns1 G 41 G.hns1.03
Hydrophobic ICL2 R 127 34x55 G.hns1 G 41 G.hns1.03
Van-der-waals ICL2 R 127 34x55 G.hns1 G 41 G.hns1.03
Hydrophobic TM3 R 115 3x50 G.H5 I 371 G.H5.23
Hydrophobic ICL2 L 123 34x51 G.S1 L 43 G.S1.02
Van-der-waals ICL2 L 123 34x51 G.S1 L 43 G.S1.02
Polar ICL3 S 213 - G.H5 D 361 G.H5.13
Hydrophobic ICL3 S 213 - G.H5 D 361 G.H5.13
Polar TM6 K 221 6x32 G.H5 N 372 G.H5.24
Van-der-waals TM6 K 221 6x32 G.H5 N 372 G.H5.24
Van-der-waals C-term W 342 - G.H4 D 314 G.H4.13
Hydrophobic TM6 I 222 6x33 G.H5 L 373 G.H5.25
Hydrophobic C-term W 342 - G.H4 T 317 G.H4.16
Van-der-waals C-term W 342 - G.H4 T 317 G.H4.16
Polar C-term K 356 - G.S2 S 198 G.S2.07
Hydrophobic C-term K 356 - G.S2 S 198 G.S2.07
Van-der-waals C-term K 356 - G.S2 S 198 G.S2.07
Hydrophobic TM3 V 119 3x54 G.H5 L 368 G.H5.20
Polar ICL3 V 212 - G.H5 D 361 G.H5.13
Hydrophobic TM6 E 218 6x29 G.H5 L 374 G.H5.26
Van-der-waals TM6 E 218 6x29 G.H5 L 374 G.H5.26
Hydrophobic TM2 L 52 2x39 G.H5 I 371 G.H5.23
Van-der-waals TM2 L 52 2x39 G.H5 I 371 G.H5.23
Polar C-term Q 354 - G.s2s3 Q 200 G.s2s3.01
Hydrophobic C-term Q 354 - G.s2s3 Q 200 G.s2s3.01
Van-der-waals C-term Q 354 - G.s2s3 Q 200 G.s2s3.01
Hydrophobic C-term L 355 - G.S2 V 199 G.S2.08
Van-der-waals C-term L 355 - G.S2 V 199 G.S2.08
Polar ICL3 S 213 - G.h4s6 R 338 G.h4s6.20
Hydrophobic ICL3 S 213 - G.h4s6 R 338 G.h4s6.20
Van-der-waals ICL3 S 213 - G.h4s6 R 338 G.h4s6.20
Hydrophobic C-term L 358 - G.S2 S 198 G.S2.07
Van-der-waals C-term L 358 - G.S2 S 198 G.S2.07
Hydrophobic ICL3 V 212 - G.H5 K 357 G.H5.09
Polar TM6 K 221 6x32 G.H5 L 374 G.H5.26
Van-der-waals TM6 K 221 6x32 G.H5 L 374 G.H5.26
Hydrophobic C-term L 355 - G.H5 I 352 G.H5.04
Van-der-waals C-term L 355 - G.H5 I 352 G.H5.04
Polar TM7 G 292 7x59 G.H5 N 372 G.H5.24
Hydrophobic TM7 G 292 7x59 G.H5 N 372 G.H5.24
Van-der-waals TM7 G 292 7x59 G.H5 N 372 G.H5.24
Hydrophobic ICL2 L 123 34x51 G.S3 T 202 G.S3.01