Golf - GPR4 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gs

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 83.1

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.7
PAE mean: 13.3


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM5 I 204 5x61 G.H5 L 380 G.H5.25
Hydrophobic TM3 R 115 3x50 G.H5 L 380 G.H5.25
Hydrophobic TM6 I 222 6x33 G.H5 L 375 G.H5.20
Polar TM4 R 130 4x38 G.HN L 37 G.HN.52
Hydrophobic TM4 R 130 4x38 G.HN L 37 G.HN.52
Van-der-waals TM4 R 130 4x38 G.HN L 37 G.HN.52
Hydrophobic TM5 V 208 5x65 G.H5 L 375 G.H5.20
Polar TM7 N 290 7x57 G.H5 E 379 G.H5.24
Hydrophobic TM7 N 290 7x57 G.H5 E 379 G.H5.24
Van-der-waals TM7 N 290 7x57 G.H5 E 379 G.H5.24
Hydrophobic ICL2 L 123 34x51 G.H5 R 367 G.H5.12
Hydrophobic ICL3 T 214 - G.H5 L 381 G.H5.26
Hydrophobic ICL3 T 214 - G.H5 L 375 G.H5.20
Polar TM3 R 115 3x50 G.H5 Y 378 G.H5.23
Hydrophobic TM3 R 115 3x50 G.H5 Y 378 G.H5.23
Van-der-waals TM3 R 115 3x50 G.H5 Y 378 G.H5.23
Hydrophobic TM6 L 225 6x36 G.H5 L 380 G.H5.25
Hydrophobic TM6 I 222 6x33 G.H5 L 381 G.H5.26
Van-der-waals TM6 I 222 6x33 G.H5 L 381 G.H5.26
Hydrophobic ICL2 P 122 34x50 G.H5 Q 371 G.H5.16
Hydrophobic ICL3 S 213 - G.h4s6 Y 345 G.h4s6.20
Hydrophobic ICL2 P 122 34x50 G.H5 I 370 G.H5.15
Hydrophobic ICL2 L 123 34x51 G.S3 V 204 G.S3.01
Van-der-waals ICL2 L 123 34x51 G.S3 V 204 G.S3.01
Hydrophobic H8 A 293 8x50 G.H5 E 379 G.H5.24
Van-der-waals H8 A 293 8x50 G.H5 E 379 G.H5.24
Hydrophobic TM3 V 119 3x54 G.H5 L 375 G.H5.20
Hydrophobic ICL2 L 123 34x51 G.H5 F 363 G.H5.08
Van-der-waals ICL2 L 123 34x51 G.H5 F 363 G.H5.08
Hydrophobic TM6 E 218 6x29 G.H5 L 381 G.H5.26
Van-der-waals TM6 E 218 6x29 G.H5 L 381 G.H5.26
Polar TM3 A 118 3x53 G.H5 H 374 G.H5.19
Hydrophobic TM3 A 118 3x53 G.H5 H 374 G.H5.19
Van-der-waals TM3 A 118 3x53 G.H5 H 374 G.H5.19
Hydrophobic TM6 L 225 6x36 G.H5 E 379 G.H5.24
Polar TM3 R 115 3x50 G.H5 E 379 G.H5.24
Van-der-waals TM3 R 115 3x50 G.H5 E 379 G.H5.24
Polar TM7 N 290 7x57 G.H5 L 380 G.H5.25
Polar TM4 K 132 4x40 G.HN Q 33 G.HN.48
Hydrophobic TM4 K 132 4x40 G.HN Q 33 G.HN.48
Van-der-waals TM4 K 132 4x40 G.HN Q 33 G.HN.48
Hydrophobic ICL1 R 49 - G.HN R 36 G.HN.51
Van-der-waals ICL1 R 49 - G.HN R 36 G.HN.51
Hydrophobic TM3 V 119 3x54 G.H5 L 380 G.H5.25
Hydrophobic TM3 D 114 3x49 G.H5 Y 378 G.H5.23
Van-der-waals TM3 D 114 3x49 G.H5 Y 378 G.H5.23
Ionic TM6 E 218 6x29 G.H5 R 372 G.H5.17
Polar TM6 E 218 6x29 G.H5 R 372 G.H5.17
Hydrophobic TM6 E 218 6x29 G.H5 R 372 G.H5.17
Van-der-waals TM6 E 218 6x29 G.H5 R 372 G.H5.17
Hydrophobic ICL2 R 124 34x52 G.S3 V 204 G.S3.01
Ionic ICL2 R 124 34x52 G.s2s3 D 202 G.s2s3.01
Polar ICL2 R 124 34x52 G.s2s3 D 202 G.s2s3.01
Van-der-waals ICL2 R 124 34x52 G.s2s3 D 202 G.s2s3.01
Polar TM3 V 119 3x54 G.H5 Q 371 G.H5.16
Hydrophobic TM3 V 119 3x54 G.H5 Q 371 G.H5.16
Van-der-waals TM3 V 119 3x54 G.H5 Q 371 G.H5.16
Polar ICL3 S 213 - G.H5 R 372 G.H5.17
Hydrophobic ICL3 S 213 - G.H5 R 372 G.H5.17
Van-der-waals ICL3 S 213 - G.H5 R 372 G.H5.17
Hydrophobic TM2 L 52 2x39 G.H5 Y 378 G.H5.23
Van-der-waals TM2 L 52 2x39 G.H5 Y 378 G.H5.23
Polar TM2 E 51 2x38 G.H5 Y 378 G.H5.23
Van-der-waals TM2 E 51 2x38 G.H5 Y 378 G.H5.23
Polar ICL3 S 213 - G.S6 Y 347 G.S6.02
Hydrophobic ICL3 S 213 - G.S6 Y 347 G.S6.02
Van-der-waals ICL3 S 213 - G.S6 Y 347 G.S6.02
Hydrophobic ICL2 P 122 34x50 G.H5 R 367 G.H5.12
Van-der-waals ICL2 P 122 34x50 G.H5 R 367 G.H5.12
Polar ICL3 V 212 - G.H5 D 368 G.H5.13
Hydrophobic ICL3 V 212 - G.H5 D 368 G.H5.13
Van-der-waals ICL3 V 212 - G.H5 D 368 G.H5.13
Hydrophobic TM6 I 222 6x33 G.H5 L 380 G.H5.25
Van-der-waals TM6 I 222 6x33 G.H5 L 380 G.H5.25
Hydrophobic ICL2 P 122 34x50 G.H5 H 374 G.H5.19
Van-der-waals ICL2 P 122 34x50 G.H5 H 374 G.H5.19
Polar ICL2 R 129 34x57 G.H5 Y 378 G.H5.23
Hydrophobic ICL2 R 129 34x57 G.H5 Y 378 G.H5.23
Van-der-waals ICL2 R 129 34x57 G.H5 Y 378 G.H5.23
Hydrophobic ICL2 L 123 34x51 G.S1 H 43 G.S1.02
Van-der-waals ICL2 L 123 34x51 G.S1 H 43 G.S1.02
Polar ICL3 S 213 - G.H5 D 368 G.H5.13
Hydrophobic ICL3 S 213 - G.H5 D 368 G.H5.13
Van-der-waals ICL3 S 213 - G.H5 D 368 G.H5.13
Polar TM1 Q 45 1x60 G.H5 E 379 G.H5.24
Van-der-waals TM1 Q 45 1x60 G.H5 E 379 G.H5.24
Hydrophobic TM3 A 118 3x53 G.H5 Y 378 G.H5.23
Van-der-waals TM3 A 118 3x53 G.H5 Y 378 G.H5.23
Polar ICL2 R 129 34x57 G.H5 H 374 G.H5.19
Aromatic ICL2 R 129 34x57 G.H5 H 374 G.H5.19
Hydrophobic ICL2 R 129 34x57 G.H5 H 374 G.H5.19
Van-der-waals ICL2 R 129 34x57 G.H5 H 374 G.H5.19
Hydrophobic ICL2 L 123 34x51 G.H5 C 366 G.H5.11
Hydrophobic ICL2 L 123 34x51 G.H5 I 370 G.H5.15
Van-der-waals ICL2 L 123 34x51 G.H5 I 370 G.H5.15
Van-der-waals TM7 Y 286 7x53 G.H5 E 379 G.H5.24
Polar TM5 A 207 5x64 G.H5 Q 371 G.H5.16
Hydrophobic TM5 A 207 5x64 G.H5 Q 371 G.H5.16
Polar ICL3 S 211 - G.H5 Q 371 G.H5.16
Van-der-waals ICL3 S 211 - G.H5 Q 371 G.H5.16
Polar ICL3 S 211 - G.H5 D 368 G.H5.13
Hydrophobic ICL3 S 211 - G.H5 D 368 G.H5.13
Van-der-waals ICL3 S 211 - G.H5 D 368 G.H5.13
Polar TM2 N 50 2x37 G.H5 Q 377 G.H5.22
Hydrophobic TM2 N 50 2x37 G.H5 Q 377 G.H5.22
Van-der-waals TM2 N 50 2x37 G.H5 Q 377 G.H5.22
Hydrophobic TM3 V 119 3x54 G.H5 H 374 G.H5.19
Hydrophobic TM6 K 221 6x32 G.H5 L 381 G.H5.26
Van-der-waals TM6 K 221 6x32 G.H5 L 381 G.H5.26