Golf - GPR82 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gs

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 81.3

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.6
iPTM Score: 0.2
PAE mean: 24.8


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Polar ICL2 S 127 - G.S3 V 204 G.S3.01
Hydrophobic ICL2 K 144 34x54 G.hns1 A 41 G.hns1.03
Van-der-waals ICL2 K 144 34x54 G.hns1 A 41 G.hns1.03
Polar TM3 R 117 3x50 G.H5 L 380 G.H5.25
Hydrophobic TM3 R 117 3x50 G.H5 L 380 G.H5.25
Van-der-waals TM3 R 117 3x50 G.H5 L 380 G.H5.25
Polar ICL2 Q 128 - G.s2s3 D 202 G.s2s3.01
Hydrophobic ICL2 Q 128 - G.s2s3 D 202 G.s2s3.01
Van-der-waals ICL2 Q 128 - G.s2s3 D 202 G.s2s3.01
Ionic TM6 K 240 6x26 G.H5 D 365 G.H5.10
Polar TM6 K 240 6x26 G.H5 D 365 G.H5.10
Van-der-waals TM6 K 240 6x26 G.H5 D 365 G.H5.10
Ionic TM2 H 51 2x40 G.H5 E 379 G.H5.24
Polar TM2 H 51 2x40 G.H5 E 379 G.H5.24
Hydrophobic TM2 H 51 2x40 G.H5 E 379 G.H5.24
Van-der-waals TM2 H 51 2x40 G.H5 E 379 G.H5.24
Polar ICL2 T 130 - G.s2s3 K 203 G.s2s3.02
Van-der-waals ICL2 T 130 - G.s2s3 K 203 G.s2s3.02
Polar ICL2 Q 128 - G.s2s3 K 203 G.s2s3.02
Hydrophobic ICL2 Q 128 - G.s2s3 K 203 G.s2s3.02
Van-der-waals ICL2 Q 128 - G.s2s3 K 203 G.s2s3.02
Hydrophobic TM3 L 121 3x54 G.H5 L 375 G.H5.20
Van-der-waals TM3 L 121 3x54 G.H5 L 375 G.H5.20
Polar ICL2 K 124 - G.H5 Q 371 G.H5.16
Hydrophobic ICL2 K 124 - G.H5 Q 371 G.H5.16
Van-der-waals ICL2 K 124 - G.H5 Q 371 G.H5.16
Polar ICL2 D 125 - G.H5 Q 371 G.H5.16
Polar ICL2 K 124 - G.S1 H 43 G.S1.02
Hydrophobic ICL2 K 124 - G.S1 H 43 G.S1.02
Van-der-waals ICL2 K 124 - G.S1 H 43 G.S1.02
Hydrophobic TM4 Q 148 4x38 G.hns1 K 40 G.hns1.02
Hydrophobic ICL3 T 235 - G.H5 D 368 G.H5.13
Van-der-waals ICL3 T 235 - G.H5 D 368 G.H5.13
Hydrophobic ICL2 K 144 34x54 G.HN L 37 G.HN.52
Van-der-waals ICL2 K 144 34x54 G.HN L 37 G.HN.52
Hydrophobic ICL2 K 145 34x55 G.HN L 37 G.HN.52
Van-der-waals ICL2 K 145 34x55 G.HN L 37 G.HN.52
Hydrophobic TM5 I 231 5x68 G.H5 D 368 G.H5.13
Van-der-waals TM5 I 231 5x68 G.H5 D 368 G.H5.13
Polar ICL2 S 127 - G.s2s3 K 203 G.s2s3.02
Hydrophobic ICL2 S 127 - G.s2s3 K 203 G.s2s3.02
Van-der-waals ICL2 S 127 - G.s2s3 K 203 G.s2s3.02
Polar ICL2 K 124 - G.S3 V 204 G.S3.01
Hydrophobic ICL2 K 124 - G.S3 V 204 G.S3.01
Van-der-waals ICL2 K 124 - G.S3 V 204 G.S3.01
Polar ICL2 S 127 - G.s2s3 D 202 G.s2s3.01
Hydrophobic ICL2 S 127 - G.s2s3 D 202 G.s2s3.01
Van-der-waals ICL2 S 127 - G.s2s3 D 202 G.s2s3.01
Polar TM4 Q 148 4x38 G.HN Q 33 G.HN.48
Hydrophobic TM4 Q 148 4x38 G.HN Q 33 G.HN.48
Van-der-waals TM4 Q 148 4x38 G.HN Q 33 G.HN.48
Polar ICL2 R 147 34x57 G.H5 H 374 G.H5.19
Van-der-waals ICL2 R 147 34x57 G.H5 H 374 G.H5.19
Van-der-waals ICL2 K 124 - G.s2s3 D 202 G.s2s3.01
Hydrophobic ICL2 K 124 - G.H5 H 374 G.H5.19
Van-der-waals ICL2 K 124 - G.H5 H 374 G.H5.19
Hydrophobic TM3 T 120 3x53 G.H5 L 375 G.H5.20
Van-der-waals TM3 T 120 3x53 G.H5 L 375 G.H5.20
Hydrophobic TM4 P 149 4x39 G.hns1 K 40 G.hns1.02
Van-der-waals TM4 P 149 4x39 G.hns1 K 40 G.hns1.02
Hydrophobic TM6 I 237 6x23 G.H5 I 369 G.H5.14
Van-der-waals TM6 I 237 6x23 G.H5 I 369 G.H5.14
Polar TM2 T 50 2x39 G.H5 E 379 G.H5.24
Hydrophobic TM4 Q 148 4x38 G.HN L 37 G.HN.52
Van-der-waals TM4 Q 148 4x38 G.HN L 37 G.HN.52
Polar ICL2 R 147 34x57 G.hns1 K 40 G.hns1.02
Hydrophobic ICL2 R 147 34x57 G.hns1 K 40 G.hns1.02
Van-der-waals ICL2 R 147 34x57 G.hns1 K 40 G.hns1.02
Hydrophobic TM6 V 247 6x33 G.H5 L 381 G.H5.26
Van-der-waals TM6 V 247 6x33 G.H5 L 381 G.H5.26
Polar H8 T 315 8x49 G.H5 E 379 G.H5.24
Ionic ICL2 D 125 - G.H5 R 367 G.H5.12
Polar ICL2 D 125 - G.H5 R 367 G.H5.12
Polar TM6 K 240 6x26 G.H5 R 372 G.H5.17
Hydrophobic TM6 K 240 6x26 G.H5 R 372 G.H5.17
Van-der-waals TM6 K 240 6x26 G.H5 R 372 G.H5.17
Hydrophobic TM6 K 240 6x26 G.H5 D 368 G.H5.13
Polar TM2 T 50 2x39 G.H5 Y 378 G.H5.23
Hydrophobic ICL3 T 235 - G.H5 D 365 G.H5.10
Van-der-waals ICL3 T 235 - G.H5 D 365 G.H5.10
Hydrophobic TM6 I 237 6x23 G.H5 D 365 G.H5.10
Van-der-waals TM6 I 237 6x23 G.H5 D 365 G.H5.10
Hydrophobic ICL2 K 144 34x54 G.HN A 38 G.HN.53
Polar ICL2 S 126 - G.s2s3 K 203 G.s2s3.02
Hydrophobic ICL2 S 126 - G.s2s3 K 203 G.s2s3.02
Van-der-waals ICL2 S 126 - G.s2s3 K 203 G.s2s3.02
Hydrophobic TM3 T 120 3x53 G.H5 L 380 G.H5.25
Van-der-waals TM3 T 120 3x53 G.H5 L 380 G.H5.25
Polar TM2 T 48 2x37 G.H5 E 379 G.H5.24
Hydrophobic TM2 T 48 2x37 G.H5 E 379 G.H5.24
Van-der-waals TM2 T 48 2x37 G.H5 E 379 G.H5.24
Ionic ICL1 K 46 - G.h2s4 D 227 G.h2s4.03
Polar ICL1 K 46 - G.h2s4 D 227 G.h2s4.03
Hydrophobic TM6 K 240 6x26 G.H5 I 369 G.H5.14
Van-der-waals TM6 K 240 6x26 G.H5 I 369 G.H5.14
Hydrophobic TM6 Y 244 6x30 G.H5 R 372 G.H5.17
Hydrophobic H8 K 318 8x52 G.h4s6 K 343 G.h4s6.12
Van-der-waals H8 K 318 8x52 G.h4s6 K 343 G.h4s6.12