Go - H2 receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 87.6

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.8
iPTM Score: 0.8
PAE mean: 11.6


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, Gβ, Gγ, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Polar H8 N 292 8x47 G.H5 G 350 G.H5.22
Van-der-waals H8 N 292 8x47 G.H5 G 350 G.H5.22
Hydrophobic C-term L 340 - G.s4h3 D 238 G.s4h3.11
Van-der-waals C-term L 340 - G.s4h3 D 238 G.s4h3.11
Hydrophobic C-term V 350 - H.hbhc T 117 H.hbhc.05
Van-der-waals C-term V 350 - H.hbhc T 117 H.hbhc.05
Van-der-waals ICL2 P 123 34x50 G.H5 N 347 G.H5.19
Hydrophobic ICL2 V 128 34x55 G.hns1 K 32 G.hns1.03
Hydrophobic C-term L 342 - G.s4h3 E 237 G.s4h3.10
Van-der-waals C-term L 342 - G.s4h3 E 237 G.s4h3.10
Polar C-term V 344 - G.H2 R 206 G.H2.01
Hydrophobic C-term V 344 - G.H2 R 206 G.H2.01
Van-der-waals C-term V 344 - G.H2 R 206 G.H2.01
Polar TM5 Q 212 5x68 G.H5 Y 354 G.H5.26
Hydrophobic TM5 Q 212 5x68 G.H5 Y 354 G.H5.26
Polar TM5 Q 212 5x68 G.H5 D 341 G.H5.13
Hydrophobic TM5 Q 212 5x68 G.H5 D 341 G.H5.13
Van-der-waals TM5 Q 212 5x68 G.H5 D 341 G.H5.13
Hydrophobic C-term T 351 - G.hfs2 T 183 G.hfs2.06
Polar TM3 R 116 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 116 3x50 G.H5 C 351 G.H5.23
Van-der-waals TM3 R 116 3x50 G.H5 C 351 G.H5.23
Polar TM5 A 213 5x69 G.H5 Y 354 G.H5.26
Polar TM6 T 235 6x36 G.H5 G 352 G.H5.24
Hydrophobic TM6 T 235 6x36 G.H5 G 352 G.H5.24
Hydrophobic H8 N 292 8x47 G.H5 G 352 G.H5.24
Hydrophobic TM5 I 216 5x72 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM5 I 216 5x72 G.h4s6 E 318 G.h4s6.12
Polar TM6 A 232 6x33 G.H5 L 353 G.H5.25
Hydrophobic TM6 A 232 6x33 G.H5 L 353 G.H5.25
Van-der-waals TM6 A 232 6x33 G.H5 L 353 G.H5.25
Ionic TM5 R 215 5x71 G.H5 D 341 G.H5.13
Polar TM5 R 215 5x71 G.H5 D 341 G.H5.13
Hydrophobic TM5 R 215 5x71 G.H5 D 341 G.H5.13
Van-der-waals TM5 R 215 5x71 G.H5 D 341 G.H5.13
Polar TM3 A 119 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 A 119 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 A 119 3x53 G.H5 N 347 G.H5.19
Polar TM6 R 228 6x29 G.h4s6 P 315 G.h4s6.09
Van-der-waals TM6 R 228 6x29 G.h4s6 P 315 G.h4s6.09
Hydrophobic C-term L 340 - G.s4h3 L 235 G.s4h3.08
Hydrophobic TM5 Q 212 5x68 G.H5 L 348 G.H5.20
Van-der-waals TM5 Q 212 5x68 G.H5 L 348 G.H5.20
Polar ICL3 S 220 - G.h4s6 E 318 G.h4s6.12
Hydrophobic ICL3 S 220 - G.h4s6 E 318 G.h4s6.12
Van-der-waals ICL3 S 220 - G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 L 236 6x37 G.H5 L 353 G.H5.25
Van-der-waals TM6 L 236 6x37 G.H5 L 353 G.H5.25
Ionic C-term E 349 - G.hfs2 R 179 G.hfs2.02
Polar C-term E 349 - G.hfs2 R 179 G.hfs2.02
Hydrophobic C-term E 349 - G.hfs2 R 179 G.hfs2.02
Van-der-waals C-term E 349 - G.hfs2 R 179 G.hfs2.02
Polar C-term V 344 - G.s4h3 E 237 G.s4h3.10
Hydrophobic C-term V 344 - G.s4h3 E 237 G.s4h3.10
Van-der-waals C-term V 344 - G.s4h3 E 237 G.s4h3.10
Hydrophobic TM5 V 208 5x64 G.H5 I 344 G.H5.16
Hydrophobic TM5 I 205 5x61 G.H5 L 348 G.H5.20
Hydrophobic ICL2 P 123 34x50 G.H5 I 343 G.H5.15
Van-der-waals ICL2 P 123 34x50 G.H5 I 343 G.H5.15
Polar TM6 K 231 6x32 G.H5 Y 354 G.H5.26
Hydrophobic TM6 K 231 6x32 G.H5 Y 354 G.H5.26
Van-der-waals TM6 K 231 6x32 G.H5 Y 354 G.H5.26
Hydrophobic TM6 T 235 6x36 G.H5 L 353 G.H5.25
Hydrophobic ICL2 L 124 34x51 G.S3 L 195 G.S3.01
Van-der-waals ICL2 L 124 34x51 G.S3 L 195 G.S3.01
Polar TM5 A 209 5x65 G.H5 Y 354 G.H5.26
Van-der-waals TM5 A 209 5x65 G.H5 Y 354 G.H5.26
Hydrophobic ICL2 L 124 34x51 G.H5 T 340 G.H5.12
Hydrophobic TM4 P 132 4x39 G.HN I 28 G.HN.52
Hydrophobic TM3 V 120 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 V 120 3x54 G.H5 L 348 G.H5.20
Hydrophobic ICL2 L 124 34x51 G.H5 F 336 G.H5.08
Aromatic TM6 R 228 6x29 G.H5 Y 354 G.H5.26
Hydrophobic TM6 R 228 6x29 G.H5 Y 354 G.H5.26
Van-der-waals TM6 R 228 6x29 G.H5 Y 354 G.H5.26
Hydrophobic ICL2 P 127 34x54 G.hns1 K 32 G.hns1.03
Hydrophobic ICL2 L 124 34x51 G.H5 I 343 G.H5.15
Van-der-waals ICL2 L 124 34x51 G.H5 I 343 G.H5.15
Hydrophobic C-term A 352 - G.hfs2 V 180 G.hfs2.03
Polar C-term W 345 - G.H2 R 206 G.H2.01
Hydrophobic TM5 A 209 5x65 G.H5 L 348 G.H5.20
Hydrophobic C-term T 348 - H.hbhc M 114 H.hbhc.02
Van-der-waals C-term T 348 - H.hbhc M 114 H.hbhc.02
Polar H8 R 293 8x48 G.h4s6 N 316 G.h4s6.10
Van-der-waals H8 R 293 8x48 G.h4s6 N 316 G.h4s6.10
Hydrophobic ICL3 I 219 - G.S6 I 319 G.S6.01
Van-der-waals ICL3 I 219 - G.S6 I 319 G.S6.01
Ionic TM6 R 228 6x29 G.h4s6 E 318 G.h4s6.12
Polar TM6 R 228 6x29 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 R 228 6x29 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM6 R 228 6x29 G.h4s6 E 318 G.h4s6.12
Hydrophobic C-term L 340 - G.s4h3 T 241 G.s4h3.14
Hydrophobic C-term Q 343 - G.s4h3 E 237 G.s4h3.10
Polar C-term G 347 - G.hfs2 K 181 G.hfs2.04
Polar TM5 Q 212 5x68 G.H5 A 345 G.H5.17
Hydrophobic TM5 Q 212 5x68 G.H5 A 345 G.H5.17
Van-der-waals TM5 Q 212 5x68 G.H5 A 345 G.H5.17
Hydrophobic TM5 Q 212 5x68 G.H5 I 344 G.H5.16
Van-der-waals TM5 Q 212 5x68 G.H5 I 344 G.H5.16
Hydrophobic ICL3 I 219 - G.S6 Y 320 G.S6.02
Hydrophobic TM5 I 205 5x61 G.H5 L 353 G.H5.25
Van-der-waals TM5 I 205 5x61 G.H5 L 353 G.H5.25
Hydrophobic C-term E 349 - G.hfs2 K 181 G.hfs2.04
Hydrophobic ICL2 P 123 34x50 G.H5 I 344 G.H5.16
Van-der-waals ICL2 P 123 34x50 G.H5 I 344 G.H5.16