G12 -
LPA4 receptor complex model
GPCR CLASS (FAMILY)
SPECIES
G PROTEIN FAMILY
DATE
3D VIEW
Tertiary structure confidence
(pLDDT score) avg.: 79.4
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered
PTM Score: 0.7
iPTM Score: 0.7
PAE mean: 14.2
GPCR - G protein interface interactions
The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle
(Gα residues)
and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid,
hydrophobic - dashed,
ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.
GPCR-G protein backbone (bb) or sidechain (sc):
Structures
0 structures selected.
Sequence Color
Interaction frequency filter (%)
Gα,
GPCR
Interaction cut-off: strict (stick), loose (line)
Interaction type |
GPCR Segment |
AA |
Number |
Generic number |
Gα segment |
AA |
Number |
Generic number |
---|---|---|---|---|---|---|---|---|
Polar | ICL2 | R | 147 | 34x54 | G.hns1 | R | 55 | G.hns1.02 |
Hydrophobic | ICL2 | R | 147 | 34x54 | G.hns1 | R | 55 | G.hns1.02 |
Van-der-waals | ICL2 | R | 147 | 34x54 | G.hns1 | R | 55 | G.hns1.02 |
Hydrophobic | ICL3 | L | 237 | - | G.H5 | L | 375 | G.H5.20 |
Van-der-waals | ICL3 | L | 237 | - | G.H5 | L | 375 | G.H5.20 |
Polar | TM6 | Q | 239 | 6x25 | G.S6 | L | 346 | G.S6.01 |
Hydrophobic | TM6 | Q | 239 | 6x25 | G.S6 | L | 346 | G.S6.01 |
Hydrophobic | TM6 | M | 250 | 6x36 | G.H5 | I | 378 | G.H5.23 |
Van-der-waals | TM6 | M | 250 | 6x36 | G.H5 | I | 378 | G.H5.23 |
Polar | C-term | F | 370 | - | G.s4h3 | R | 265 | G.s4h3.12 |
Hydrophobic | C-term | F | 370 | - | G.s4h3 | R | 265 | G.s4h3.12 |
Van-der-waals | C-term | F | 370 | - | G.s4h3 | R | 265 | G.s4h3.12 |
Hydrophobic | C-term | S | 368 | - | H.hdhe | F | 173 | H.hdhe.01 |
Hydrophobic | TM6 | N | 243 | 6x29 | G.H5 | M | 379 | G.H5.24 |
Van-der-waals | TM6 | N | 243 | 6x29 | G.H5 | M | 379 | G.H5.24 |
Polar | ICL2 | R | 147 | 34x54 | G.S1 | L | 57 | G.S1.01 |
Hydrophobic | TM3 | A | 139 | 3x53 | G.H5 | I | 378 | G.H5.23 |
Van-der-waals | TM3 | A | 139 | 3x53 | G.H5 | I | 378 | G.H5.23 |
Hydrophobic | TM6 | I | 240 | 6x26 | G.H5 | Q | 372 | G.H5.17 |
Van-der-waals | TM6 | I | 240 | 6x26 | G.H5 | Q | 372 | G.H5.17 |
Hydrophobic | C-term | F | 370 | - | H.HA | K | 114 | H.HA.28 |
Van-der-waals | C-term | F | 370 | - | H.HA | K | 114 | H.HA.28 |
Hydrophobic | ICL2 | F | 144 | 34x51 | G.H5 | I | 370 | G.H5.15 |
Van-der-waals | ICL2 | F | 144 | 34x51 | G.H5 | I | 370 | G.H5.15 |
Hydrophobic | ICL1 | M | 68 | 12x48 | G.H5 | L | 380 | G.H5.25 |
Van-der-waals | ICL1 | M | 68 | 12x48 | G.H5 | L | 380 | G.H5.25 |
Hydrophobic | TM6 | I | 240 | 6x26 | G.H5 | D | 368 | G.H5.13 |
Polar | C-term | S | 368 | - | H.HA | K | 114 | H.HA.28 |
Van-der-waals | C-term | S | 368 | - | H.HA | K | 114 | H.HA.28 |
Polar | C-term | S | 368 | - | H.HA | D | 110 | H.HA.24 |
Hydrophobic | C-term | S | 368 | - | H.HA | D | 110 | H.HA.24 |
Van-der-waals | C-term | S | 368 | - | H.HA | D | 110 | H.HA.24 |
Hydrophobic | TM6 | Q | 239 | 6x25 | G.h4s6 | P | 345 | G.h4s6.20 |
Van-der-waals | TM6 | Q | 239 | 6x25 | G.h4s6 | P | 345 | G.h4s6.20 |
Hydrophobic | TM6 | V | 247 | 6x33 | G.H5 | M | 379 | G.H5.24 |
Van-der-waals | TM6 | V | 247 | 6x33 | G.H5 | M | 379 | G.H5.24 |
Polar | TM3 | A | 139 | 3x53 | G.H5 | N | 374 | G.H5.19 |
Hydrophobic | TM3 | A | 139 | 3x53 | G.H5 | N | 374 | G.H5.19 |
Van-der-waals | TM3 | A | 139 | 3x53 | G.H5 | N | 374 | G.H5.19 |
Aromatic | ICL2 | F | 144 | 34x51 | G.H5 | F | 363 | G.H5.08 |
Hydrophobic | ICL2 | F | 144 | 34x51 | G.H5 | F | 363 | G.H5.08 |
Van-der-waals | ICL2 | F | 144 | 34x51 | G.H5 | F | 363 | G.H5.08 |
Hydrophobic | ICL3 | T | 236 | - | G.H5 | D | 368 | G.H5.13 |
Van-der-waals | ICL3 | T | 236 | - | G.H5 | D | 368 | G.H5.13 |
Hydrophobic | TM2 | A | 75 | 2x40 | G.H5 | L | 380 | G.H5.25 |
Hydrophobic | C-term | F | 370 | - | H.HA | A | 111 | H.HA.25 |
Van-der-waals | C-term | F | 370 | - | H.HA | A | 111 | H.HA.25 |
Hydrophobic | ICL2 | F | 144 | 34x51 | G.H5 | K | 367 | G.H5.12 |
Van-der-waals | ICL2 | F | 144 | 34x51 | G.H5 | K | 367 | G.H5.12 |
Hydrophobic | ICL2 | F | 144 | 34x51 | G.S1 | V | 58 | G.S1.02 |
Van-der-waals | ICL2 | F | 144 | 34x51 | G.S1 | V | 58 | G.S1.02 |
Hydrophobic | TM6 | K | 246 | 6x32 | G.H5 | M | 379 | G.H5.24 |
Hydrophobic | H8 | L | 315 | 8x47 | G.H5 | M | 379 | G.H5.24 |
Van-der-waals | H8 | L | 315 | 8x47 | G.H5 | M | 379 | G.H5.24 |
Polar | TM2 | E | 73 | 2x38 | G.H5 | D | 377 | G.H5.22 |
Hydrophobic | TM2 | S | 72 | 2x37 | G.H5 | L | 380 | G.H5.25 |
Van-der-waals | TM2 | S | 72 | 2x37 | G.H5 | L | 380 | G.H5.25 |
Polar | ICL2 | S | 146 | 34x53 | G.H5 | N | 374 | G.H5.19 |
Polar | ICL2 | P | 143 | 34x50 | G.H5 | N | 374 | G.H5.19 |
Polar | C-term | S | 368 | - | H.HA | A | 111 | H.HA.25 |
Hydrophobic | C-term | S | 368 | - | H.HA | A | 111 | H.HA.25 |
Van-der-waals | C-term | S | 368 | - | H.HA | A | 111 | H.HA.25 |
Polar | H8 | E | 316 | 8x48 | G.H5 | Q | 381 | G.H5.26 |
Hydrophobic | H8 | E | 316 | 8x48 | G.H5 | Q | 381 | G.H5.26 |
Van-der-waals | H8 | E | 316 | 8x48 | G.H5 | Q | 381 | G.H5.26 |
Polar | H8 | S | 317 | 8x49 | G.H5 | L | 380 | G.H5.25 |
Hydrophobic | H8 | S | 317 | 8x49 | G.H5 | L | 380 | G.H5.25 |
Van-der-waals | H8 | S | 317 | 8x49 | G.H5 | L | 380 | G.H5.25 |
Hydrophobic | ICL2 | P | 143 | 34x50 | G.H5 | L | 371 | G.H5.16 |
Ionic | C-term | E | 367 | - | H.HA | K | 114 | H.HA.28 |
Polar | C-term | E | 367 | - | H.HA | K | 114 | H.HA.28 |
Hydrophobic | C-term | E | 367 | - | H.HA | K | 114 | H.HA.28 |
Van-der-waals | C-term | E | 367 | - | H.HA | K | 114 | H.HA.28 |
Hydrophobic | TM3 | I | 140 | 3x54 | G.H5 | L | 375 | G.H5.20 |
Hydrophobic | H8 | L | 315 | 8x47 | G.H5 | L | 380 | G.H5.25 |
Van-der-waals | H8 | L | 315 | 8x47 | G.H5 | L | 380 | G.H5.25 |
Hydrophobic | TM2 | I | 78 | 2x43 | G.H5 | L | 380 | G.H5.25 |
Van-der-waals | TM2 | I | 78 | 2x43 | G.H5 | L | 380 | G.H5.25 |
Hydrophobic | TM1 | F | 64 | 1x57 | G.H5 | L | 380 | G.H5.25 |
Hydrophobic | ICL2 | F | 144 | 34x51 | G.S3 | F | 223 | G.S3.03 |
Polar | TM6 | Q | 239 | 6x25 | G.S6 | F | 347 | G.S6.02 |
Hydrophobic | TM6 | Q | 239 | 6x25 | G.S6 | F | 347 | G.S6.02 |
Van-der-waals | TM6 | Q | 239 | 6x25 | G.S6 | F | 347 | G.S6.02 |
Hydrophobic | C-term | L | 366 | - | H.HA | R | 106 | H.HA.20 |
Van-der-waals | C-term | L | 366 | - | H.HA | R | 106 | H.HA.20 |
Polar | ICL2 | R | 147 | 34x54 | G.h2s4 | T | 246 | G.h2s4.05 |
Hydrophobic | ICL2 | F | 144 | 34x51 | G.S3 | I | 221 | G.S3.01 |
Van-der-waals | ICL2 | F | 144 | 34x51 | G.S3 | I | 221 | G.S3.01 |
Hydrophobic | C-term | F | 370 | - | H.HD | E | 172 | H.HD.12 |
Van-der-waals | C-term | F | 370 | - | H.HD | E | 172 | H.HD.12 |
Hydrophobic | ICL2 | T | 148 | 34x55 | G.hns1 | R | 56 | G.hns1.03 |
Van-der-waals | ICL2 | T | 148 | 34x55 | G.hns1 | R | 56 | G.hns1.03 |
Hydrophobic | ICL2 | T | 148 | 34x55 | G.HN | R | 52 | G.HN.52 |
Van-der-waals | ICL2 | T | 148 | 34x55 | G.HN | R | 52 | G.HN.52 |
Hydrophobic | ICL2 | T | 148 | 34x55 | G.hns1 | R | 55 | G.hns1.02 |
Hydrophobic | C-term | F | 370 | - | H.hdhe | F | 173 | H.hdhe.01 |
Hydrophobic | TM3 | I | 140 | 3x54 | G.H5 | I | 378 | G.H5.23 |
Hydrophobic | ICL2 | F | 144 | 34x51 | G.H5 | V | 366 | G.H5.11 |
Polar | TM2 | S | 72 | 2x37 | G.H5 | D | 377 | G.H5.22 |
Hydrophobic | TM2 | S | 72 | 2x37 | G.H5 | D | 377 | G.H5.22 |
Van-der-waals | TM2 | S | 72 | 2x37 | G.H5 | D | 377 | G.H5.22 |
Hydrophobic | TM3 | R | 136 | 3x50 | G.H5 | I | 378 | G.H5.23 |
Van-der-waals | TM3 | R | 136 | 3x50 | G.H5 | I | 378 | G.H5.23 |
Hydrophobic | ICL2 | P | 143 | 34x50 | G.H5 | K | 367 | G.H5.12 |
Van-der-waals | ICL2 | P | 143 | 34x50 | G.H5 | K | 367 | G.H5.12 |
Hydrophobic | C-term | F | 370 | - | H.HA | L | 115 | H.HA.29 |
Van-der-waals | C-term | F | 370 | - | H.HA | L | 115 | H.HA.29 |
Polar | H8 | S | 317 | 8x49 | G.H5 | Q | 381 | G.H5.26 |
Hydrophobic | H8 | S | 317 | 8x49 | G.H5 | Q | 381 | G.H5.26 |
Ionic | ICL2 | R | 150 | 34x57 | G.H5 | D | 377 | G.H5.22 |
Polar | ICL2 | R | 150 | 34x57 | G.H5 | D | 377 | G.H5.22 |
Van-der-waals | ICL2 | R | 150 | 34x57 | G.H5 | D | 377 | G.H5.22 |
Polar | TM2 | T | 74 | 2x39 | G.H5 | D | 377 | G.H5.22 |
Hydrophobic | ICL3 | T | 236 | - | G.H5 | L | 371 | G.H5.16 |
Polar | ICL2 | R | 150 | 34x57 | G.H5 | N | 374 | G.H5.19 |
Hydrophobic | ICL3 | L | 237 | - | G.H5 | L | 371 | G.H5.16 |
Van-der-waals | ICL3 | L | 237 | - | G.H5 | L | 371 | G.H5.16 |
Polar | C-term | T | 369 | - | G.s4h3 | R | 265 | G.s4h3.12 |
Hydrophobic | C-term | T | 369 | - | G.s4h3 | R | 265 | G.s4h3.12 |
Van-der-waals | C-term | T | 369 | - | G.s4h3 | R | 265 | G.s4h3.12 |
Polar | C-term | S | 368 | - | H.HA | V | 107 | H.HA.21 |
Hydrophobic | C-term | S | 368 | - | H.HA | V | 107 | H.HA.21 |
Van-der-waals | C-term | S | 368 | - | H.HA | V | 107 | H.HA.21 |
Hydrophobic | TM3 | I | 140 | 3x54 | G.H5 | L | 371 | G.H5.16 |
Van-der-waals | TM3 | I | 140 | 3x54 | G.H5 | L | 371 | G.H5.16 |
Hydrophobic | ICL2 | R | 147 | 34x54 | G.H5 | I | 370 | G.H5.15 |
Hydrophobic | TM6 | V | 247 | 6x33 | G.H5 | L | 375 | G.H5.20 |
Hydrophobic | C-term | L | 366 | - | H.HA | K | 103 | H.HA.17 |
Hydrophobic | ICL2 | P | 143 | 34x50 | G.H5 | I | 370 | G.H5.15 |
Van-der-waals | ICL2 | P | 143 | 34x50 | G.H5 | I | 370 | G.H5.15 |
Polar | H8 | S | 317 | 8x49 | G.H5 | M | 379 | G.H5.24 |
Hydrophobic | TM4 | T | 151 | 4x38 | G.hns1 | R | 55 | G.hns1.02 |
Van-der-waals | TM4 | T | 151 | 4x38 | G.hns1 | R | 55 | G.hns1.02 |
Hydrophobic | C-term | E | 367 | - | H.HA | D | 110 | H.HA.24 |
Van-der-waals | C-term | E | 367 | - | H.HA | D | 110 | H.HA.24 |