G13 - MRGPRD complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

G12/13

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 82.4

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.7
PAE mean: 13.5


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic ICL2 K 134 34x54 G.H5 I 366 G.H5.15
Hydrophobic TM6 V 222 6x36 G.H5 M 375 G.H5.24
Van-der-waals TM6 V 222 6x36 G.H5 M 375 G.H5.24
Hydrophobic TM7 V 279 7x56 G.H5 M 375 G.H5.24
Van-der-waals H8 R 286 8x53 G.h4s6 Q 338 G.h4s6.12
Van-der-waals H8 R 283 8x50 G.h4s6 Q 339 G.h4s6.13
Hydrophobic TM7 Y 276 7x53 G.H5 L 376 G.H5.25
Van-der-waals TM7 Y 276 7x53 G.H5 L 376 G.H5.25
Polar H8 R 290 8x57 G.H3 R 279 G.H3.16
Van-der-waals H8 R 290 8x57 G.H3 R 279 G.H3.16
Hydrophobic TM3 V 127 3x54 G.H5 L 367 G.H5.16
Van-der-waals TM3 V 127 3x54 G.H5 L 367 G.H5.16
Hydrophobic ICL2 F 133 34x53 G.H5 N 370 G.H5.19
Hydrophobic C-term L 300 - G.H2 R 230 G.H2.04
Hydrophobic H8 G 280 8x47 G.H5 L 376 G.H5.25
Van-der-waals H8 G 280 8x47 G.H5 L 376 G.H5.25
Hydrophobic H8 L 292 8x59 G.H3 V 280 G.H3.17
Van-der-waals H8 L 292 8x59 G.H3 V 280 G.H3.17
Hydrophobic ICL2 I 131 34x51 G.S3 V 216 G.S3.01
Van-der-waals ICL2 I 131 34x51 G.S3 V 216 G.S3.01
Van-der-waals TM6 R 218 6x32 G.H5 Q 377 G.H5.26
Hydrophobic TM2 F 61 2x39 G.H5 Q 373 G.H5.22
Hydrophobic TM6 L 219 6x33 G.H5 L 371 G.H5.20
Van-der-waals TM6 L 219 6x33 G.H5 L 371 G.H5.20
Hydrophobic TM7 F 277 7x54 G.H5 L 376 G.H5.25
Van-der-waals TM7 F 277 7x54 G.H5 L 376 G.H5.25
Hydrophobic ICL2 P 130 34x50 G.H5 I 366 G.H5.15
Van-der-waals ICL2 P 130 34x50 G.H5 I 366 G.H5.15
Polar TM4 R 139 4x39 G.HN S 39 G.HN.48
Hydrophobic TM6 L 219 6x33 G.H5 L 374 G.H5.23
Van-der-waals TM3 S 126 3x53 G.H5 L 374 G.H5.23
Hydrophobic TM2 F 61 2x39 G.H5 L 374 G.H5.23
Van-der-waals TM2 F 61 2x39 G.H5 L 374 G.H5.23
Polar ICL2 P 130 34x50 G.H5 N 370 G.H5.19
Polar TM4 R 139 4x39 G.HN T 43 G.HN.52
Hydrophobic TM4 R 139 4x39 G.HN T 43 G.HN.52
Van-der-waals TM4 R 139 4x39 G.HN T 43 G.HN.52
Hydrophobic H8 G 280 8x47 G.H5 Q 377 G.H5.26
Van-der-waals H8 G 280 8x47 G.H5 Q 377 G.H5.26
Hydrophobic ICL2 P 130 34x50 G.H5 L 367 G.H5.16
Hydrophobic ICL2 I 131 34x51 G.H5 F 359 G.H5.08
Hydrophobic C-term L 296 - G.H3 N 278 G.H3.15
Van-der-waals C-term L 296 - G.H3 N 278 G.H3.15
Hydrophobic C-term L 300 - G.H2 F 234 G.H2.08
Van-der-waals C-term L 300 - G.H2 F 234 G.H2.08
Hydrophobic TM3 V 127 3x54 G.H5 L 371 G.H5.20
Van-der-waals TM3 V 127 3x54 G.H5 L 371 G.H5.20
Hydrophobic TM3 V 127 3x54 G.H5 L 374 G.H5.23
Polar TM3 S 126 3x53 G.H5 N 370 G.H5.19
Hydrophobic TM3 S 126 3x53 G.H5 N 370 G.H5.19
Van-der-waals TM3 S 126 3x53 G.H5 N 370 G.H5.19
Hydrophobic C-term L 296 - G.H2 F 234 G.H2.08
Van-der-waals C-term L 296 - G.H2 F 234 G.H2.08
Polar TM2 N 59 2x37 G.H5 Q 373 G.H5.22
Hydrophobic TM2 N 59 2x37 G.H5 Q 373 G.H5.22
Van-der-waals TM2 N 59 2x37 G.H5 Q 373 G.H5.22
Hydrophobic TM2 C 62 2x40 G.H5 L 376 G.H5.25
Polar ICL2 H 136 34x56 G.s2s3 N 215 G.s2s3.02
Hydrophobic ICL2 H 136 34x56 G.s2s3 N 215 G.s2s3.02
Van-der-waals ICL2 H 136 34x56 G.s2s3 N 215 G.s2s3.02
Hydrophobic TM5 S 208 5x66 G.H5 L 367 G.H5.16
Hydrophobic TM2 I 65 2x43 G.H5 L 376 G.H5.25
Polar TM3 R 123 3x50 G.H5 L 374 G.H5.23
Hydrophobic TM3 R 123 3x50 G.H5 L 374 G.H5.23
Van-der-waals TM3 R 123 3x50 G.H5 L 374 G.H5.23
Hydrophobic ICL2 P 130 34x50 G.H5 K 363 G.H5.12
Aromatic ICL3 W 212 - G.H5 H 368 G.H5.17
Hydrophobic ICL3 W 212 - G.H5 H 368 G.H5.17
Van-der-waals ICL3 W 212 - G.H5 H 368 G.H5.17
Hydrophobic TM6 R 218 6x32 G.H5 M 375 G.H5.24
Van-der-waals TM6 R 218 6x32 G.H5 M 375 G.H5.24
Polar H8 S 281 8x48 G.H5 L 376 G.H5.25
Ionic C-term E 303 - G.H2 K 231 G.H2.05
Hydrophobic ICL2 I 131 34x51 G.H5 I 366 G.H5.15
Van-der-waals ICL2 I 131 34x51 G.H5 I 366 G.H5.15
Hydrophobic H8 L 292 8x59 G.H3 R 279 G.H3.16
Van-der-waals H8 L 292 8x59 G.H3 R 279 G.H3.16
Polar ICL2 K 134 34x54 G.h2s4 T 241 G.h2s4.05
Van-der-waals ICL2 K 134 34x54 G.h2s4 T 241 G.h2s4.05
Polar ICL2 H 136 34x56 G.hns1 R 47 G.hns1.03
Hydrophobic ICL2 H 136 34x56 G.hns1 R 47 G.hns1.03
Van-der-waals ICL2 H 136 34x56 G.hns1 R 47 G.hns1.03
Hydrophobic C-term L 300 - G.H2 K 231 G.H2.05
Hydrophobic ICL2 C 135 34x55 G.S3 V 216 G.S3.01
Hydrophobic ICL2 I 131 34x51 G.H5 K 363 G.H5.12
Hydrophobic H8 T 289 8x56 G.H3 R 279 G.H3.16
Van-der-waals H8 T 289 8x56 G.H3 R 279 G.H3.16
Hydrophobic TM5 V 205 5x63 G.H5 L 371 G.H5.20
Hydrophobic TM6 L 219 6x33 G.H5 M 375 G.H5.24
Van-der-waals TM6 L 219 6x33 G.H5 M 375 G.H5.24
Hydrophobic ICL2 C 135 34x55 G.S1 V 49 G.S1.02
Hydrophobic ICL3 W 212 - G.H5 L 371 G.H5.20
Van-der-waals ICL3 W 212 - G.H5 L 371 G.H5.20
Hydrophobic ICL3 W 212 - G.H5 L 367 G.H5.16
Polar ICL3 W 212 - G.H5 D 364 G.H5.13
Hydrophobic ICL3 W 212 - G.H5 D 364 G.H5.13
Van-der-waals ICL3 W 212 - G.H5 D 364 G.H5.13
Polar ICL2 C 135 34x55 G.hns1 R 47 G.hns1.03
Hydrophobic ICL2 C 135 34x55 G.hns1 R 47 G.hns1.03
Van-der-waals ICL2 C 135 34x55 G.hns1 R 47 G.hns1.03
Hydrophobic H8 G 280 8x47 G.H5 M 375 G.H5.24
Van-der-waals H8 G 280 8x47 G.H5 M 375 G.H5.24
Polar ICL2 R 137 34x57 G.hns1 R 47 G.hns1.03
Van-der-waals ICL2 R 137 34x57 G.hns1 R 47 G.hns1.03
Hydrophobic H8 L 292 8x59 G.H3 N 278 G.H3.15
Van-der-waals H8 L 292 8x59 G.H3 N 278 G.H3.15