Gi1 - motilin receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 80.8

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.7
PAE mean: 14.7


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM5 R 279 5x70 G.H5 T 340 G.H5.12
Van-der-waals TM5 R 279 5x70 G.H5 T 340 G.H5.12
Ionic TM4 R 153 4x40 G.HN D 20 G.HN.44
Polar TM4 R 153 4x40 G.HN D 20 G.HN.44
Van-der-waals TM4 R 153 4x40 G.HN D 20 G.HN.44
Ionic TM6 R 289 6x26 G.H5 D 341 G.H5.13
Polar TM6 R 289 6x26 G.H5 D 341 G.H5.13
Hydrophobic TM6 R 289 6x26 G.H5 D 341 G.H5.13
Van-der-waals TM6 R 289 6x26 G.H5 D 341 G.H5.13
Hydrophobic TM6 V 299 6x36 G.H5 L 353 G.H5.25
Hydrophobic TM5 L 281 5x72 G.S6 I 319 G.S6.01
Van-der-waals TM5 L 281 5x72 G.S6 I 319 G.S6.01
Hydrophobic ICL2 L 144 34x51 G.H5 I 343 G.H5.15
Hydrophobic TM3 I 140 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 I 140 3x54 G.H5 L 348 G.H5.20
Hydrophobic ICL2 V 148 34x55 G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 V 148 34x55 G.hns1 R 32 G.hns1.03
Hydrophobic TM5 L 281 5x72 G.S6 Y 320 G.S6.02
Hydrophobic TM6 T 296 6x33 G.H5 L 348 G.H5.20
Ionic TM4 R 154 4x41 G.HN E 28 G.HN.52
Polar TM4 R 154 4x41 G.HN E 28 G.HN.52
Van-der-waals TM4 R 154 4x41 G.HN E 28 G.HN.52
Hydrophobic TM5 L 281 5x72 G.h4s6 E 318 G.h4s6.12
Hydrophobic ICL2 R 147 34x54 G.H5 I 343 G.H5.15
Polar H8 K 360 8x48 G.H5 F 354 G.H5.26
Polar TM3 R 136 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 136 3x50 G.H5 C 351 G.H5.23
Van-der-waals TM3 R 136 3x50 G.H5 C 351 G.H5.23
Hydrophobic ICL2 P 143 34x50 G.H5 I 343 G.H5.15
Van-der-waals ICL2 P 143 34x50 G.H5 I 343 G.H5.15
Hydrophobic TM7 I 358 7x56 G.H5 L 353 G.H5.25
Polar H8 S 359 8x47 G.H5 G 352 G.H5.24
Hydrophobic H8 S 359 8x47 G.H5 G 352 G.H5.24
Hydrophobic ICL2 V 148 34x55 G.HN E 28 G.HN.52
Hydrophobic TM4 R 154 4x41 G.HN R 24 G.HN.48
Van-der-waals TM4 R 154 4x41 G.HN R 24 G.HN.48
Polar TM2 T 73 2x39 G.H5 C 351 G.H5.23
Hydrophobic TM2 T 73 2x39 G.H5 C 351 G.H5.23
Polar ICL2 R 147 34x54 G.S1 E 33 G.S1.01
Polar TM3 A 139 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 A 139 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 A 139 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 R 136 3x50 G.H5 L 353 G.H5.25
Hydrophobic TM3 A 139 3x53 G.H5 C 351 G.H5.23
Hydrophobic ICL2 L 144 34x51 G.S3 L 194 G.S3.01
Van-der-waals ICL2 L 144 34x51 G.S3 L 194 G.S3.01
Polar TM2 T 73 2x39 G.H5 D 350 G.H5.22
Polar TM2 T 71 2x37 G.H5 D 350 G.H5.22
Hydrophobic TM5 L 274 5x65 G.H5 L 348 G.H5.20
Hydrophobic TM5 P 280 5x71 G.S6 H 322 G.S6.04
Van-der-waals TM5 P 280 5x71 G.S6 H 322 G.S6.04
Hydrophobic TM3 I 140 3x54 G.H5 L 353 G.H5.25
Hydrophobic ICL2 P 143 34x50 G.H5 I 344 G.H5.16
Polar TM6 T 296 6x33 G.H5 L 353 G.H5.25
Hydrophobic TM6 T 296 6x33 G.H5 L 353 G.H5.25
Van-der-waals TM6 T 296 6x33 G.H5 L 353 G.H5.25
Hydrophobic ICL2 P 143 34x50 G.H5 T 340 G.H5.12
Ionic TM5 R 279 5x70 G.H5 D 341 G.H5.13
Polar TM5 R 279 5x70 G.H5 D 341 G.H5.13
Hydrophobic TM5 R 279 5x70 G.H5 D 341 G.H5.13
Van-der-waals TM5 R 279 5x70 G.H5 D 341 G.H5.13
Ionic TM5 R 279 5x70 G.H5 D 337 G.H5.09
Polar TM5 R 279 5x70 G.H5 D 337 G.H5.09
Hydrophobic TM5 R 279 5x70 G.H5 D 337 G.H5.09
Van-der-waals TM5 R 279 5x70 G.H5 D 337 G.H5.09
Polar ICL2 R 147 34x54 G.hns1 A 31 G.hns1.02
Hydrophobic ICL2 R 147 34x54 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 R 147 34x54 G.hns1 A 31 G.hns1.02
Hydrophobic TM3 I 140 3x54 G.H5 I 344 G.H5.16
Hydrophobic ICL3 A 285 - G.h4s6 E 318 G.h4s6.12
Hydrophobic ICL2 L 144 34x51 G.H5 F 336 G.H5.08
Van-der-waals ICL2 L 144 34x51 G.H5 F 336 G.H5.08
Hydrophobic TM6 L 300 6x37 G.H5 L 353 G.H5.25