Gq - MT2 receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gq/11

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 85.3

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.7
PAE mean: 13.6


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, Gβ, Gγ, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Polar H8 N 314 8x49 G.H5 N 357 G.H5.24
Van-der-waals H8 N 314 8x49 G.H5 N 357 G.H5.24
Hydrophobic ICL3 K 235 - G.h4s6 I 323 G.h4s6.20
Van-der-waals ICL3 K 235 - G.h4s6 I 323 G.h4s6.20
Hydrophobic TM5 A 234 5x72 G.H5 F 339 G.H5.06
Hydrophobic TM3 I 142 3x54 G.H5 L 358 G.H5.25
Van-der-waals TM3 I 142 3x54 G.H5 L 358 G.H5.25
Polar TM3 N 137 3x49 G.H5 Y 356 G.H5.23
Van-der-waals TM3 N 137 3x49 G.H5 Y 356 G.H5.23
Polar TM3 Y 141 3x53 G.H5 N 352 G.H5.19
Hydrophobic TM3 Y 141 3x53 G.H5 N 352 G.H5.19
Van-der-waals TM3 Y 141 3x53 G.H5 N 352 G.H5.19
Hydrophobic ICL3 P 236 - G.H5 F 339 G.H5.06
Hydrophobic TM5 V 227 5x65 G.H5 L 353 G.H5.20
Hydrophobic TM5 A 234 5x72 G.H5 A 342 G.H5.09
Polar TM6 T 252 6x36 G.H5 L 358 G.H5.25
Polar TM3 Y 141 3x53 G.H5 E 355 G.H5.22
Hydrophobic TM3 Y 141 3x53 G.H5 E 355 G.H5.22
Van-der-waals TM3 Y 141 3x53 G.H5 E 355 G.H5.22
Hydrophobic TM5 L 226 5x64 G.H5 L 349 G.H5.16
Polar ICL2 Y 148 34x53 G.H5 Y 356 G.H5.23
Van-der-waals ICL2 Y 148 34x53 G.H5 Y 356 G.H5.23
Hydrophobic C-term S 347 - G.H3 P 262 G.H3.16
Hydrophobic TM6 S 249 6x33 G.H5 V 359 G.H5.26
Hydrophobic TM6 M 253 6x37 G.H5 L 353 G.H5.20
Van-der-waals TM6 M 253 6x37 G.H5 L 353 G.H5.20
Aromatic TM3 Y 141 3x53 G.H5 Y 356 G.H5.23
Hydrophobic TM3 Y 141 3x53 G.H5 Y 356 G.H5.23
Van-der-waals TM3 Y 141 3x53 G.H5 Y 356 G.H5.23
Hydrophobic TM6 M 253 6x37 G.H5 V 359 G.H5.26
Aromatic ICL2 H 149 34x54 G.hns1 R 37 G.hns1.02
Hydrophobic ICL2 M 146 34x51 G.s2s3 S 198 G.s2s3.02
Van-der-waals ICL2 M 146 34x51 G.s2s3 S 198 G.s2s3.02
Polar ICL3 K 235 - G.S6 I 324 G.S6.01
Hydrophobic ICL3 K 235 - G.S6 I 324 G.S6.01
Van-der-waals ICL3 K 235 - G.S6 I 324 G.S6.01
Hydrophobic TM5 I 223 5x61 G.H5 L 353 G.H5.20
Hydrophobic TM5 L 226 5x64 G.H5 K 345 G.H5.12
Hydrophobic TM5 K 233 5x71 G.H5 A 342 G.H5.09
Van-der-waals TM5 K 233 5x71 G.H5 A 342 G.H5.09
Hydrophobic TM3 R 138 3x50 G.H5 L 358 G.H5.25
Van-der-waals TM3 R 138 3x50 G.H5 L 358 G.H5.25
Van-der-waals TM6 S 249 6x33 G.H5 L 358 G.H5.25
Polar H8 N 312 8x47 G.H5 N 357 G.H5.24
Hydrophobic H8 N 312 8x47 G.H5 N 357 G.H5.24
Van-der-waals H8 N 312 8x47 G.H5 N 357 G.H5.24
Hydrophobic TM5 A 234 5x72 G.H5 D 346 G.H5.13
Van-der-waals TM5 A 234 5x72 G.H5 D 346 G.H5.13
Hydrophobic TM5 V 227 5x65 G.H5 L 349 G.H5.16
Van-der-waals TM5 V 227 5x65 G.H5 L 349 G.H5.16
Aromatic ICL3 K 235 - G.S6 Y 325 G.S6.02
Hydrophobic ICL3 K 235 - G.S6 Y 325 G.S6.02
Hydrophobic TM3 I 142 3x54 G.H5 N 352 G.H5.19
Hydrophobic ICL2 M 146 34x51 G.hns1 R 38 G.hns1.03
Van-der-waals ICL2 M 146 34x51 G.hns1 R 38 G.hns1.03
Polar TM3 R 138 3x50 G.H5 Y 356 G.H5.23
Hydrophobic TM3 R 138 3x50 G.H5 Y 356 G.H5.23
Van-der-waals TM3 R 138 3x50 G.H5 Y 356 G.H5.23
Hydrophobic TM5 A 230 5x68 G.H5 L 349 G.H5.16
Van-der-waals TM5 A 230 5x68 G.H5 L 349 G.H5.16
Hydrophobic TM6 M 253 6x37 G.H5 L 358 G.H5.25
Van-der-waals TM6 M 253 6x37 G.H5 L 358 G.H5.25
Hydrophobic TM3 I 142 3x54 G.H5 L 349 G.H5.16
Van-der-waals TM3 I 142 3x54 G.H5 L 349 G.H5.16
Hydrophobic TM5 A 234 5x72 G.H5 A 343 G.H5.10
Hydrophobic TM5 A 230 5x68 G.H5 D 346 G.H5.13
Hydrophobic TM3 I 142 3x54 G.H5 L 353 G.H5.20
Hydrophobic TM5 A 234 5x72 G.S6 Y 325 G.S6.02
Van-der-waals TM5 A 234 5x72 G.S6 Y 325 G.S6.02
Hydrophobic C-term I 352 - G.H3 Y 261 G.H3.15
Van-der-waals C-term I 352 - G.H3 Y 261 G.H3.15
Hydrophobic TM2 G 75 2x39 G.H5 Y 356 G.H5.23
Polar TM5 R 231 5x69 G.H5 D 346 G.H5.13
Hydrophobic TM5 R 231 5x69 G.H5 D 346 G.H5.13