G11 - OR51A4 complex model

GPCR CLASS (FAMILY)

O1 (fish-like odorant)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gq/11

DATE

2023-09-15

3D VIEW

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Tertiary structure confidence

(pLDDT score) avg.: 86.9

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.6
PAE mean: 15.3


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM6 K 237 6x32 G.H5 V 359 G.H5.26
Hydrophobic TM6 K 237 6x32 G.H5 L 353 G.H5.20
Hydrophobic TM3 I 128 3x54 G.H5 L 349 G.H5.16
Van-der-waals TM3 I 128 3x54 G.H5 L 349 G.H5.16
Hydrophobic TM5 I 229 5x68 G.H5 L 349 G.H5.16
Polar TM6 K 237 6x32 G.H5 N 357 G.H5.24
Hydrophobic TM6 K 237 6x32 G.H5 N 357 G.H5.24
Van-der-waals TM6 K 237 6x32 G.H5 N 357 G.H5.24
Hydrophobic TM2 M 61 2x39 G.H5 Y 356 G.H5.23
Van-der-waals TM2 M 61 2x39 G.H5 Y 356 G.H5.23
Hydrophobic TM6 E 234 6x29 G.H5 D 346 G.H5.13
Polar ICL2 P 131 34x50 G.H5 N 352 G.H5.19
Van-der-waals ICL2 P 131 34x50 G.H5 N 352 G.H5.19
Polar H8 K 298 8x48 G.H5 V 359 G.H5.26
Hydrophobic H8 K 298 8x48 G.H5 V 359 G.H5.26
Van-der-waals H8 K 298 8x48 G.H5 V 359 G.H5.26
Hydrophobic ICL2 L 132 34x51 G.H5 I 348 G.H5.15
Van-der-waals ICL2 L 132 34x51 G.H5 I 348 G.H5.15
Hydrophobic TM3 I 128 3x54 G.H5 L 353 G.H5.20
Polar TM3 A 127 3x53 G.H5 N 352 G.H5.19
Hydrophobic TM3 A 127 3x53 G.H5 N 352 G.H5.19
Van-der-waals TM3 A 127 3x53 G.H5 N 352 G.H5.19
Polar TM3 R 124 3x50 G.H5 Y 356 G.H5.23
Hydrophobic TM3 R 124 3x50 G.H5 Y 356 G.H5.23
Van-der-waals TM3 R 124 3x50 G.H5 Y 356 G.H5.23
Hydrophobic ICL2 L 132 34x51 G.H5 V 344 G.H5.11
Hydrophobic TM6 K 237 6x32 G.H5 K 354 G.H5.21
Hydrophobic H8 T 297 8x47 G.H5 L 358 G.H5.25
Van-der-waals H8 T 297 8x47 G.H5 L 358 G.H5.25
Hydrophobic ICL2 R 133 34x52 G.S3 I 199 G.S3.01
Polar H8 Q 299 8x49 G.H5 E 355 G.H5.22
Hydrophobic H8 Q 299 8x49 G.H5 E 355 G.H5.22
Van-der-waals H8 Q 299 8x49 G.H5 E 355 G.H5.22
Polar H8 Q 299 8x49 G.H5 K 354 G.H5.21
Hydrophobic ICL2 L 132 34x51 G.S1 L 40 G.S1.02
Van-der-waals ICL2 L 132 34x51 G.S1 L 40 G.S1.02
Hydrophobic TM6 N 240 6x35 G.H5 N 357 G.H5.24
Van-der-waals TM6 N 240 6x35 G.H5 N 357 G.H5.24
Polar TM3 H 129 3x55 G.H5 K 345 G.H5.12
Aromatic TM3 H 129 3x55 G.H5 K 345 G.H5.12
Polar ICL2 R 133 34x52 G.s2s3 E 197 G.s2s3.01
Hydrophobic ICL2 R 133 34x52 G.s2s3 E 197 G.s2s3.01
Van-der-waals ICL2 R 133 34x52 G.s2s3 E 197 G.s2s3.01
Hydrophobic TM6 T 241 6x36 G.H5 Y 356 G.H5.23
Van-der-waals TM6 T 241 6x36 G.H5 Y 356 G.H5.23
Hydrophobic ICL2 P 131 34x50 G.H5 K 345 G.H5.12
Van-der-waals ICL2 P 131 34x50 G.H5 K 345 G.H5.12
Polar TM2 Y 62 2x40 G.H5 E 355 G.H5.22
Van-der-waals TM2 Y 62 2x40 G.H5 E 355 G.H5.22
Hydrophobic ICL2 L 132 34x51 G.H5 K 345 G.H5.12
Hydrophobic TM6 T 241 6x36 G.H5 L 353 G.H5.20
Van-der-waals TM6 T 241 6x36 G.H5 L 353 G.H5.20
Hydrophobic ICL2 P 131 34x50 G.H5 L 349 G.H5.16
Ionic TM2 E 59 2x37 G.hns1 R 37 G.hns1.02
Polar TM2 E 59 2x37 G.hns1 R 37 G.hns1.02
Hydrophobic ICL2 L 132 34x51 G.H5 F 341 G.H5.08
Van-der-waals ICL2 L 132 34x51 G.H5 F 341 G.H5.08
Hydrophobic ICL2 Y 134 34x53 G.H5 N 352 G.H5.19
Hydrophobic TM3 A 127 3x53 G.H5 L 349 G.H5.16
Polar ICL2 T 135 34x54 G.hns1 R 37 G.hns1.02
Hydrophobic ICL2 T 135 34x54 G.hns1 R 37 G.hns1.02
Van-der-waals ICL2 T 135 34x54 G.hns1 R 37 G.hns1.02
Polar TM7 K 296 7x56 G.H5 L 358 G.H5.25
Hydrophobic TM7 K 296 7x56 G.H5 L 358 G.H5.25
Van-der-waals TM7 K 296 7x56 G.H5 L 358 G.H5.25
Hydrophobic ICL2 R 133 34x52 G.s2s3 N 198 G.s2s3.02
Van-der-waals ICL2 R 133 34x52 G.s2s3 N 198 G.s2s3.02
Hydrophobic ICL2 P 131 34x50 G.H5 I 348 G.H5.15
Van-der-waals ICL2 P 131 34x50 G.H5 I 348 G.H5.15
Polar TM6 T 241 6x36 G.H5 N 357 G.H5.24
Hydrophobic TM6 T 241 6x36 G.H5 N 357 G.H5.24
Van-der-waals TM6 T 241 6x36 G.H5 N 357 G.H5.24
Polar ICL2 Y 134 34x53 G.H5 Y 356 G.H5.23
Hydrophobic ICL2 Y 134 34x53 G.H5 Y 356 G.H5.23
Polar TM6 K 237 6x32 G.H5 Q 350 G.H5.17
Van-der-waals TM6 K 237 6x32 G.H5 Q 350 G.H5.17
Hydrophobic TM7 V 295 7x55 G.H5 L 358 G.H5.25
Van-der-waals TM7 V 295 7x55 G.H5 L 358 G.H5.25
Hydrophobic H8 K 298 8x48 G.H5 L 358 G.H5.25
Van-der-waals H8 K 298 8x48 G.H5 L 358 G.H5.25
Polar ICL2 S 136 34x55 G.hns1 R 38 G.hns1.03
Hydrophobic ICL2 S 136 34x55 G.hns1 R 38 G.hns1.03
Hydrophobic TM3 A 127 3x53 G.H5 Y 356 G.H5.23
Van-der-waals TM3 A 127 3x53 G.H5 Y 356 G.H5.23
Polar TM4 T 140 4x39 G.HN R 34 G.HN.52
Hydrophobic TM4 T 140 4x39 G.HN R 34 G.HN.52
Van-der-waals TM4 T 140 4x39 G.HN R 34 G.HN.52
Hydrophobic TM6 A 238 6x33 G.H5 L 353 G.H5.20
Van-der-waals TM6 A 238 6x33 G.H5 L 353 G.H5.20
Hydrophobic ICL2 L 132 34x51 G.S3 I 199 G.S3.01
Van-der-waals ICL2 L 132 34x51 G.S3 I 199 G.S3.01
Polar TM3 D 123 3x49 G.H5 Y 356 G.H5.23
Hydrophobic TM3 D 123 3x49 G.H5 Y 356 G.H5.23
Van-der-waals TM3 D 123 3x49 G.H5 Y 356 G.H5.23
Hydrophobic H8 R 301 8x51 G.H5 L 358 G.H5.25
Van-der-waals H8 R 301 8x51 G.H5 L 358 G.H5.25
Polar TM6 E 234 6x29 G.H5 Q 350 G.H5.17
Hydrophobic TM6 E 234 6x29 G.H5 Q 350 G.H5.17
Van-der-waals TM6 E 234 6x29 G.H5 Q 350 G.H5.17
Hydrophobic TM2 E 59 2x37 G.H5 E 355 G.H5.22
Van-der-waals TM2 E 59 2x37 G.H5 E 355 G.H5.22
Hydrophobic TM4 V 141 4x40 G.HN R 34 G.HN.52
Van-der-waals TM4 V 141 4x40 G.HN R 34 G.HN.52
Ionic TM6 K 233 6x28 G.h4s6 D 321 G.h4s6.12
Polar TM6 K 233 6x28 G.h4s6 D 321 G.h4s6.12