G13 - OR51F1 complex model

GPCR CLASS (FAMILY)

O1 (fish-like odorant)

SPECIES

Homo sapiens

G PROTEIN FAMILY

G12/13

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 80.4

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.6
iPTM Score: 0.3
PAE mean: 23.3


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Polar TM2 Y 69 2x40 G.H5 Q 377 G.H5.26
Hydrophobic TM2 Y 69 2x40 G.H5 Q 377 G.H5.26
Van-der-waals TM2 Y 69 2x40 G.H5 Q 377 G.H5.26
Hydrophobic ICL2 I 144 34x56 G.hns1 K 46 G.hns1.02
Van-der-waals ICL2 I 144 34x56 G.hns1 K 46 G.hns1.02
Ionic TM6 E 242 6x29 G.H5 K 363 G.H5.12
Polar TM6 E 242 6x29 G.H5 K 363 G.H5.12
Polar ICL2 Y 141 34x53 G.H5 Q 377 G.H5.26
Van-der-waals ICL2 Y 141 34x53 G.H5 Q 377 G.H5.26
Hydrophobic ICL2 L 139 34x51 G.S1 L 48 G.S1.01
Hydrophobic ICL2 R 140 34x52 G.hns1 R 47 G.hns1.03
Van-der-waals ICL2 R 140 34x52 G.hns1 R 47 G.hns1.03
Polar TM3 R 131 3x50 G.H5 Q 377 G.H5.26
Van-der-waals TM3 R 131 3x50 G.H5 Q 377 G.H5.26
Polar TM2 M 68 2x39 G.H5 Q 377 G.H5.26
Hydrophobic TM2 M 68 2x39 G.H5 Q 377 G.H5.26
Van-der-waals TM2 M 68 2x39 G.H5 Q 377 G.H5.26
Hydrophobic TM6 T 249 6x36 G.H5 M 375 G.H5.24
Van-der-waals TM6 T 249 6x36 G.H5 M 375 G.H5.24
Hydrophobic ICL2 L 139 34x51 G.H5 I 366 G.H5.15
Van-der-waals ICL2 L 139 34x51 G.H5 I 366 G.H5.15
Hydrophobic TM3 A 134 3x53 G.H5 L 374 G.H5.23
Van-der-waals TM3 A 134 3x53 G.H5 L 374 G.H5.23
Hydrophobic ICL2 L 139 34x51 G.hns1 R 47 G.hns1.03
Van-der-waals ICL2 L 139 34x51 G.hns1 R 47 G.hns1.03
Polar TM2 Y 69 2x40 G.H5 L 376 G.H5.25
Hydrophobic TM2 Y 69 2x40 G.H5 L 376 G.H5.25
Van-der-waals TM2 Y 69 2x40 G.H5 L 376 G.H5.25
Polar ICL2 Y 141 34x53 G.H5 Q 373 G.H5.22
Hydrophobic ICL2 Y 141 34x53 G.H5 Q 373 G.H5.22
Van-der-waals ICL2 Y 141 34x53 G.H5 Q 373 G.H5.22
Hydrophobic ICL2 P 138 34x50 G.H5 N 370 G.H5.19
Van-der-waals ICL2 P 138 34x50 G.H5 N 370 G.H5.19
Hydrophobic TM6 V 246 6x33 G.H5 L 371 G.H5.20
Polar ICL2 R 140 34x52 G.HN Y 44 G.HN.53
Van-der-waals ICL2 R 140 34x52 G.HN Y 44 G.HN.53
Polar ICL2 L 139 34x51 G.h2s4 T 241 G.h2s4.05
Hydrophobic ICL2 L 139 34x51 G.h2s4 T 241 G.h2s4.05
Van-der-waals ICL2 L 139 34x51 G.h2s4 T 241 G.h2s4.05
Hydrophobic ICL2 L 139 34x51 G.H5 L 367 G.H5.16
Hydrophobic ICL2 L 139 34x51 G.H5 N 370 G.H5.19
Van-der-waals ICL2 L 139 34x51 G.H5 N 370 G.H5.19
Hydrophobic TM2 M 68 2x39 G.H5 L 374 G.H5.23
Van-der-waals TM2 M 68 2x39 G.H5 L 374 G.H5.23
Hydrophobic ICL2 T 142 34x54 G.H5 Q 373 G.H5.22
Van-der-waals ICL2 T 142 34x54 G.H5 Q 373 G.H5.22
Hydrophobic H8 T 305 8x47 G.H5 L 376 G.H5.25
Van-der-waals H8 T 305 8x47 G.H5 L 376 G.H5.25
Polar TM6 K 245 6x32 G.H5 H 368 G.H5.17
Aromatic TM6 K 245 6x32 G.H5 H 368 G.H5.17
Hydrophobic TM6 K 245 6x32 G.H5 H 368 G.H5.17
Van-der-waals TM6 K 245 6x32 G.H5 H 368 G.H5.17
Hydrophobic TM3 D 137 3x56 G.hns1 K 46 G.hns1.02
Van-der-waals TM3 D 137 3x56 G.hns1 K 46 G.hns1.02
Polar TM3 Y 132 3x51 G.hns1 R 47 G.hns1.03
Van-der-waals TM3 Y 132 3x51 G.hns1 R 47 G.hns1.03
Polar ICL2 R 140 34x52 G.hns1 V 45 G.hns1.01
Hydrophobic ICL2 R 140 34x52 G.hns1 V 45 G.hns1.01
Van-der-waals ICL2 R 140 34x52 G.hns1 V 45 G.hns1.01
Hydrophobic ICL2 P 138 34x50 G.H5 L 374 G.H5.23
Van-der-waals ICL2 P 138 34x50 G.H5 L 374 G.H5.23
Hydrophobic TM2 E 66 2x37 G.H5 Q 373 G.H5.22
Polar TM2 P 67 2x38 G.H5 Q 377 G.H5.26
Hydrophobic TM2 P 67 2x38 G.H5 Q 377 G.H5.26
Van-der-waals TM2 P 67 2x38 G.H5 Q 377 G.H5.26
Hydrophobic ICL2 L 139 34x51 G.S3 V 216 G.S3.01
Polar ICL2 R 140 34x52 G.hns1 K 46 G.hns1.02
Hydrophobic ICL2 R 140 34x52 G.hns1 K 46 G.hns1.02
Van-der-waals ICL2 R 140 34x52 G.hns1 K 46 G.hns1.02
Hydrophobic TM2 M 68 2x39 G.H5 M 375 G.H5.24
Hydrophobic ICL3 A 238 - G.s2s3 K 214 G.s2s3.01
Hydrophobic ICL2 Y 141 34x53 G.H5 L 374 G.H5.23
Van-der-waals ICL2 Y 141 34x53 G.H5 L 374 G.H5.23
Polar H8 T 305 8x47 G.H5 Q 377 G.H5.26
Hydrophobic H8 T 305 8x47 G.H5 Q 377 G.H5.26
Van-der-waals H8 T 305 8x47 G.H5 Q 377 G.H5.26
Polar TM3 C 136 3x55 G.hns1 R 47 G.hns1.03
Polar TM2 E 66 2x37 G.H5 Q 377 G.H5.26
Hydrophobic TM2 E 66 2x37 G.H5 Q 377 G.H5.26
Van-der-waals TM2 E 66 2x37 G.H5 Q 377 G.H5.26
Hydrophobic TM6 K 245 6x32 G.H5 M 375 G.H5.24
Hydrophobic TM6 V 246 6x33 G.H5 M 375 G.H5.24
Van-der-waals TM6 E 242 6x29 G.H5 D 364 G.H5.13
Polar ICL2 R 140 34x52 G.S1 L 48 G.S1.01
Hydrophobic ICL2 R 140 34x52 G.S1 L 48 G.S1.01
Van-der-waals ICL2 R 140 34x52 G.S1 L 48 G.S1.01
Hydrophobic H8 Q 307 8x49 G.H5 L 376 G.H5.25
Van-der-waals H8 Q 307 8x49 G.H5 L 376 G.H5.25
Hydrophobic ICL2 L 139 34x51 G.S1 V 49 G.S1.02
Van-der-waals ICL2 L 139 34x51 G.S1 V 49 G.S1.02
Hydrophobic TM3 I 135 3x54 G.H5 L 371 G.H5.20
Polar TM3 R 131 3x50 G.H5 L 374 G.H5.23
Van-der-waals TM3 R 131 3x50 G.H5 L 374 G.H5.23
Ionic TM3 D 137 3x56 G.hns1 R 47 G.hns1.03
Polar TM3 D 137 3x56 G.hns1 R 47 G.hns1.03
Hydrophobic TM3 D 137 3x56 G.hns1 R 47 G.hns1.03
Van-der-waals TM3 D 137 3x56 G.hns1 R 47 G.hns1.03
Hydrophobic ICL2 P 138 34x50 G.H5 L 367 G.H5.16