Go - OR1G1 complex model

GPCR CLASS (FAMILY)

O2 (tetrapod specific odorant)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 83.6

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.6
PAE mean: 16.9


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Polar TM2 Y 60 2x40 G.H5 G 352 G.H5.24
Hydrophobic TM2 Y 60 2x40 G.H5 G 352 G.H5.24
Van-der-waals TM2 Y 60 2x40 G.H5 G 352 G.H5.24
Polar H8 Q 295 8x48 G.H5 Y 354 G.H5.26
Hydrophobic H8 Q 295 8x48 G.H5 Y 354 G.H5.26
Van-der-waals H8 Q 295 8x48 G.H5 Y 354 G.H5.26
Hydrophobic TM6 K 236 6x32 G.H5 A 345 G.H5.17
Hydrophobic TM6 S 230 6x26 G.S6 Y 320 G.S6.02
Hydrophobic TM3 A 125 3x53 G.H5 C 351 G.H5.23
Van-der-waals TM3 A 125 3x53 G.H5 C 351 G.H5.23
Hydrophobic TM2 M 59 2x39 G.H5 G 350 G.H5.22
Polar TM2 Y 60 2x40 G.H5 R 349 G.H5.21
Hydrophobic TM6 T 240 6x36 G.H5 Y 354 G.H5.26
Van-der-waals TM6 T 240 6x36 G.H5 Y 354 G.H5.26
Hydrophobic TM6 K 236 6x32 G.H5 Y 354 G.H5.26
Van-der-waals TM6 K 236 6x32 G.H5 Y 354 G.H5.26
Polar ICL2 P 129 34x50 G.H5 N 347 G.H5.19
Van-der-waals ICL2 P 129 34x50 G.H5 N 347 G.H5.19
Polar TM2 T 57 2x37 G.H5 G 350 G.H5.22
Hydrophobic TM2 T 57 2x37 G.H5 G 350 G.H5.22
Van-der-waals TM2 T 57 2x37 G.H5 G 350 G.H5.22
Hydrophobic TM7 Y 290 7x53 G.H5 L 353 G.H5.25
Hydrophobic ICL2 Y 132 34x53 G.H5 N 347 G.H5.19
Van-der-waals ICL2 Y 132 34x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 C 122 3x50 G.H5 L 353 G.H5.25
Van-der-waals TM3 C 122 3x50 G.H5 L 353 G.H5.25
Hydrophobic ICL2 L 130 34x51 G.H5 F 336 G.H5.08
Van-der-waals ICL2 L 130 34x51 G.H5 F 336 G.H5.08
Hydrophobic H8 E 296 8x49 G.H5 R 349 G.H5.21
Van-der-waals H8 E 296 8x49 G.H5 R 349 G.H5.21
Polar H8 E 296 8x49 G.H5 G 350 G.H5.22
Hydrophobic ICL2 P 129 34x50 G.H5 T 340 G.H5.12
Van-der-waals ICL2 P 129 34x50 G.H5 T 340 G.H5.12
Hydrophobic TM6 T 240 6x36 G.H5 L 353 G.H5.25
Van-der-waals TM6 T 240 6x36 G.H5 L 353 G.H5.25
Hydrophobic TM3 I 126 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 I 126 3x54 G.H5 L 348 G.H5.20
Polar TM3 A 125 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 A 125 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 A 125 3x53 G.H5 N 347 G.H5.19
Hydrophobic ICL2 H 131 34x52 G.s2s3 N 194 G.s2s3.02
Van-der-waals ICL2 H 131 34x52 G.s2s3 N 194 G.s2s3.02
Hydrophobic ICL2 L 134 34x55 G.hns1 K 32 G.hns1.03
Van-der-waals ICL2 L 134 34x55 G.hns1 K 32 G.hns1.03
Hydrophobic TM6 T 240 6x36 G.H5 L 348 G.H5.20
Van-der-waals TM6 T 240 6x36 G.H5 L 348 G.H5.20
Hydrophobic ICL2 L 134 34x55 G.HN I 28 G.HN.52
Van-der-waals ICL2 L 134 34x55 G.HN I 28 G.HN.52
Hydrophobic ICL2 L 130 34x51 G.H5 I 343 G.H5.15
Van-der-waals ICL2 L 130 34x51 G.H5 I 343 G.H5.15
Polar TM3 D 121 3x49 G.H5 C 351 G.H5.23
Hydrophobic TM3 D 121 3x49 G.H5 C 351 G.H5.23
Van-der-waals TM3 D 121 3x49 G.H5 C 351 G.H5.23
Hydrophobic ICL2 P 129 34x50 G.H5 I 343 G.H5.15
Van-der-waals ICL2 P 129 34x50 G.H5 I 343 G.H5.15
Hydrophobic ICL2 L 130 34x51 G.H5 T 340 G.H5.12
Hydrophobic ICL2 I 133 34x54 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 I 133 34x54 G.hns1 A 31 G.hns1.02
Hydrophobic TM3 A 125 3x53 G.H5 L 348 G.H5.20
Polar ICL2 Y 132 34x53 G.H5 C 351 G.H5.23
Hydrophobic ICL2 Y 132 34x53 G.H5 C 351 G.H5.23
Hydrophobic TM2 M 59 2x39 G.H5 L 353 G.H5.25
Van-der-waals TM2 M 59 2x39 G.H5 L 353 G.H5.25
Polar TM6 K 236 6x32 G.h4s6 N 316 G.h4s6.10
Hydrophobic TM6 Q 232 6x28 G.h4s6 E 318 G.h4s6.12
Hydrophobic ICL2 L 130 34x51 G.S3 L 195 G.S3.01
Van-der-waals ICL2 L 130 34x51 G.S3 L 195 G.S3.01
Hydrophobic TM6 H 244 6x40 G.H5 L 353 G.H5.25
Van-der-waals TM6 H 244 6x40 G.H5 L 353 G.H5.25
Hydrophobic ICL2 P 129 34x50 G.H5 I 344 G.H5.16
Van-der-waals ICL2 P 129 34x50 G.H5 I 344 G.H5.16
Hydrophobic TM2 M 59 2x39 G.H5 C 351 G.H5.23
Van-der-waals TM2 M 59 2x39 G.H5 C 351 G.H5.23
Polar TM6 S 243 6x39 G.H5 L 353 G.H5.25
Hydrophobic TM6 S 243 6x39 G.H5 L 353 G.H5.25
Van-der-waals TM6 S 243 6x39 G.H5 L 353 G.H5.25
Hydrophobic H8 N 294 8x47 G.H5 Y 354 G.H5.26
Van-der-waals H8 N 294 8x47 G.H5 Y 354 G.H5.26
Hydrophobic TM6 A 237 6x33 G.H5 L 348 G.H5.20
Van-der-waals TM6 A 237 6x33 G.H5 L 348 G.H5.20
Polar H8 N 294 8x47 G.H5 G 352 G.H5.24
Hydrophobic H8 N 294 8x47 G.H5 G 352 G.H5.24
Van-der-waals H8 N 294 8x47 G.H5 G 352 G.H5.24
Ionic TM6 K 236 6x32 G.h4s6 E 318 G.h4s6.12
Polar TM6 K 236 6x32 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 K 236 6x32 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM6 K 236 6x32 G.h4s6 E 318 G.h4s6.12
Hydrophobic ICL3 I 228 - G.H5 D 341 G.H5.13
Van-der-waals ICL3 I 228 - G.H5 D 341 G.H5.13
Hydrophobic TM2 M 59 2x39 G.H5 G 352 G.H5.24
Van-der-waals TM2 M 59 2x39 G.H5 G 352 G.H5.24
Hydrophobic TM3 I 126 3x54 G.H5 I 344 G.H5.16
Hydrophobic TM2 Y 60 2x40 G.H5 G 350 G.H5.22
Van-der-waals TM2 Y 60 2x40 G.H5 G 350 G.H5.22