Go - OX2 receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 84.2

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.8
iPTM Score: 0.8
PAE mean: 12.5


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, Gβ, Gγ, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM3 I 156 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 I 156 3x54 G.H5 L 348 G.H5.20
Polar TM6 Q 295 6x26 G.H5 Y 354 G.H5.26
Hydrophobic TM6 Q 295 6x26 G.H5 Y 354 G.H5.26
Van-der-waals TM6 Q 295 6x26 G.H5 Y 354 G.H5.26
Polar C-term R 404 - G.H5 N 347 G.H5.19
Van-der-waals C-term R 404 - G.H5 N 347 G.H5.19
Polar C-term K 405 - G.hns1 A 31 G.hns1.02
Hydrophobic C-term K 405 - G.hns1 A 31 G.hns1.02
Van-der-waals C-term K 405 - G.hns1 A 31 G.hns1.02
Polar H8 S 368 8x47 G.H5 G 352 G.H5.24
Hydrophobic H8 S 368 8x47 G.H5 G 352 G.H5.24
Van-der-waals H8 S 368 8x47 G.H5 G 352 G.H5.24
Polar TM6 T 302 6x33 G.H5 L 353 G.H5.25
Hydrophobic TM6 T 302 6x33 G.H5 L 353 G.H5.25
Van-der-waals TM6 T 302 6x33 G.H5 L 353 G.H5.25
Hydrophobic TM6 T 302 6x33 G.H5 L 348 G.H5.20
Hydrophobic C-term L 407 - G.HN G 27 G.HN.51
Polar TM6 Q 295 6x26 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 Q 295 6x26 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM6 Q 295 6x26 G.h4s6 E 318 G.h4s6.12
Polar TM3 A 155 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 A 155 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 A 155 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 R 152 3x50 G.H5 L 353 G.H5.25
Van-der-waals TM3 R 152 3x50 G.H5 L 353 G.H5.25
Polar C-term R 404 - G.H5 N 346 G.H5.18
Hydrophobic C-term R 404 - G.H5 N 346 G.H5.18
Van-der-waals C-term R 404 - G.H5 N 346 G.H5.18
Hydrophobic C-term I 417 - G.HN C 3 G.HN.09
Van-der-waals C-term I 417 - G.HN C 3 G.HN.09
Hydrophobic ICL3 A 288 - G.H4 E 309 G.H4.16
Van-der-waals ICL3 A 288 - G.H4 E 309 G.H4.16
Hydrophobic ICL2 L 160 34x51 G.H5 F 336 G.H5.08
Van-der-waals ICL2 L 160 34x51 G.H5 F 336 G.H5.08
Hydrophobic TM3 I 156 3x54 G.H5 L 353 G.H5.25
Hydrophobic ICL2 L 160 34x51 G.H5 T 340 G.H5.12
Hydrophobic C-term L 407 - G.HN I 28 G.HN.52
Van-der-waals C-term L 407 - G.HN I 28 G.HN.52
Hydrophobic ICL2 P 159 34x50 G.H5 I 343 G.H5.15
Hydrophobic TM5 L 250 5x65 G.H5 L 348 G.H5.20
Hydrophobic TM5 P 256 5x71 G.H5 D 337 G.H5.09
Van-der-waals TM5 P 256 5x71 G.H5 D 337 G.H5.09
Hydrophobic TM6 L 306 6x37 G.H5 L 353 G.H5.25
Van-der-waals TM6 L 306 6x37 G.H5 L 353 G.H5.25
Hydrophobic TM6 K 294 6x25 G.h4s6 P 315 G.h4s6.09
Van-der-waals TM6 K 294 6x25 G.h4s6 P 315 G.h4s6.09
Hydrophobic ICL2 F 162 34x53 G.hns1 K 32 G.hns1.03
Hydrophobic TM6 R 299 6x30 G.H5 Y 354 G.H5.26
Hydrophobic ICL2 P 159 34x50 G.H5 I 344 G.H5.16
Van-der-waals ICL2 P 159 34x50 G.H5 I 344 G.H5.16
Ionic TM6 R 299 6x30 G.H5 D 341 G.H5.13
Polar TM6 R 299 6x30 G.H5 D 341 G.H5.13
Hydrophobic TM6 R 299 6x30 G.H5 D 341 G.H5.13
Van-der-waals TM6 R 299 6x30 G.H5 D 341 G.H5.13
Polar C-term S 400 - G.h2s4 E 217 G.h2s4.02
Hydrophobic C-term S 400 - G.h2s4 E 217 G.h2s4.02
Van-der-waals C-term S 400 - G.h2s4 E 217 G.h2s4.02
Polar C-term T 408 - G.HN K 24 G.HN.48
Polar TM3 R 152 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 152 3x50 G.H5 C 351 G.H5.23
Hydrophobic ICL2 L 160 34x51 G.H5 I 343 G.H5.15
Polar C-term L 407 - G.HN K 24 G.HN.48
Hydrophobic C-term L 407 - G.HN K 24 G.HN.48
Van-der-waals C-term L 407 - G.HN K 24 G.HN.48
Hydrophobic TM5 K 249 5x64 G.H5 I 344 G.H5.16
Van-der-waals TM5 K 249 5x64 G.H5 I 344 G.H5.16
Hydrophobic TM5 P 256 5x71 G.H5 D 341 G.H5.13
Hydrophobic TM3 I 156 3x54 G.H5 I 344 G.H5.16
Hydrophobic TM6 A 298 6x29 G.H5 Y 354 G.H5.26
Van-der-waals TM6 A 298 6x29 G.H5 Y 354 G.H5.26
Hydrophobic ICL2 L 160 34x51 G.S3 L 195 G.S3.01
Hydrophobic C-term R 398 - G.h3s5 I 261 G.h3s5.01
Van-der-waals C-term R 398 - G.h3s5 I 261 G.h3s5.01
Hydrophobic ICL2 F 162 34x53 G.H5 I 343 G.H5.15
Polar TM2 T 89 2x39 G.H5 C 351 G.H5.23
Hydrophobic TM2 T 89 2x39 G.H5 C 351 G.H5.23
Van-der-waals TM2 T 89 2x39 G.H5 C 351 G.H5.23
Hydrophobic TM5 R 253 5x68 G.H5 I 344 G.H5.16
Van-der-waals TM5 R 253 5x68 G.H5 I 344 G.H5.16
Hydrophobic TM5 I 255 5x70 G.S6 Y 320 G.S6.02
Hydrophobic TM5 P 256 5x71 G.H5 A 338 G.H5.10
Hydrophobic ICL2 F 162 34x53 G.S3 L 195 G.S3.01
Hydrophobic TM5 P 256 5x71 G.S6 Y 320 G.S6.02
Van-der-waals TM5 P 256 5x71 G.S6 Y 320 G.S6.02
Ionic TM6 R 299 6x30 G.h4s6 E 318 G.h4s6.12
Polar TM6 R 299 6x30 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM3 A 155 3x53 G.H5 C 351 G.H5.23
Hydrophobic ICL2 P 159 34x50 G.H5 T 340 G.H5.12