Gs - PAR3 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gs

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 80.6

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.7
PAE mean: 13.4


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM6 Y 299 6x34 G.H5 L 388 G.H5.20
Hydrophobic C-term L 372 - G.h4s6 D 354 G.h4s6.10
Hydrophobic TM2 T 128 2x39 G.H5 Y 391 G.H5.23
Van-der-waals TM2 T 128 2x39 G.H5 Y 391 G.H5.23
Hydrophobic TM3 I 195 3x54 G.H5 L 393 G.H5.25
Ionic C-term R 365 - G.H5 E 392 G.H5.24
Aromatic ICL2 F 199 34x51 G.H5 F 376 G.H5.08
Hydrophobic ICL2 F 199 34x51 G.H5 F 376 G.H5.08
Van-der-waals ICL2 F 199 34x51 G.H5 F 376 G.H5.08
Hydrophobic ICL2 G 203 34x55 G.hns1 R 38 G.hns1.02
Polar TM3 N 190 3x49 G.H5 Y 391 G.H5.23
Van-der-waals TM3 N 190 3x49 G.H5 Y 391 G.H5.23
Hydrophobic ICL2 R 202 34x54 G.H5 H 387 G.H5.19
Hydrophobic TM5 Y 292 5x68 G.H5 Q 384 G.H5.16
Van-der-waals TM5 Y 292 5x68 G.H5 Q 384 G.H5.16
Hydrophobic TM6 W 296 6x31 G.H5 L 388 G.H5.20
Van-der-waals TM6 W 296 6x31 G.H5 L 388 G.H5.20
Hydrophobic C-term R 365 - G.H5 L 394 G.H5.26
Aromatic ICL2 F 199 34x51 G.S1 H 41 G.S1.02
Hydrophobic ICL2 F 199 34x51 G.S1 H 41 G.S1.02
Van-der-waals ICL2 F 199 34x51 G.S1 H 41 G.S1.02
Polar TM3 A 194 3x53 G.H5 H 387 G.H5.19
Hydrophobic TM3 A 194 3x53 G.H5 H 387 G.H5.19
Van-der-waals TM3 A 194 3x53 G.H5 H 387 G.H5.19
Hydrophobic TM3 A 194 3x53 G.H5 Y 391 G.H5.23
Van-der-waals TM3 A 194 3x53 G.H5 Y 391 G.H5.23
Hydrophobic ICL2 P 198 34x50 G.H5 R 380 G.H5.12
Van-der-waals ICL2 P 198 34x50 G.H5 R 380 G.H5.12
Hydrophobic TM2 I 126 2x37 G.H5 Q 390 G.H5.22
Van-der-waals TM2 I 126 2x37 G.H5 Q 390 G.H5.22
Hydrophobic C-term L 372 - G.h4s6 G 353 G.h4s6.09
Van-der-waals C-term L 372 - G.h4s6 G 353 G.h4s6.09
Hydrophobic C-term L 372 - G.h4s6 G 355 G.h4s6.11
Van-der-waals C-term L 372 - G.h4s6 G 355 G.h4s6.11
Polar C-term T 364 - G.H5 E 392 G.H5.24
Hydrophobic C-term T 364 - G.H5 E 392 G.H5.24
Van-der-waals C-term T 364 - G.H5 E 392 G.H5.24
Hydrophobic ICL2 F 199 34x51 G.H5 R 380 G.H5.12
Van-der-waals ICL2 F 199 34x51 G.H5 R 380 G.H5.12
Hydrophobic TM5 L 289 5x65 G.H5 Q 384 G.H5.16
Hydrophobic ICL2 F 199 34x51 G.S3 V 217 G.S3.01
Van-der-waals ICL2 F 199 34x51 G.S3 V 217 G.S3.01
Van-der-waals TM5 T 288 5x64 G.H5 Q 384 G.H5.16
Hydrophobic ICL2 F 199 34x51 G.H5 I 383 G.H5.15
Van-der-waals ICL2 F 199 34x51 G.H5 I 383 G.H5.15
Hydrophobic TM6 W 296 6x31 G.H5 L 394 G.H5.26
Van-der-waals TM6 W 296 6x31 G.H5 L 394 G.H5.26
Hydrophobic TM7 M 361 7x56 G.H5 L 393 G.H5.25
Van-der-waals TM7 M 361 7x56 G.H5 L 393 G.H5.25
Hydrophobic ICL2 P 198 34x50 G.H5 H 387 G.H5.19
Van-der-waals ICL2 P 198 34x50 G.H5 H 387 G.H5.19
Hydrophobic ICL2 P 198 34x50 G.H5 I 383 G.H5.15
Polar TM3 I 195 3x54 G.H5 Q 384 G.H5.16
Hydrophobic TM3 I 195 3x54 G.H5 Q 384 G.H5.16
Van-der-waals TM3 I 195 3x54 G.H5 Q 384 G.H5.16
Polar ICL2 R 202 34x54 G.hns1 R 38 G.hns1.02
Van-der-waals ICL2 R 202 34x54 G.hns1 R 38 G.hns1.02
Hydrophobic TM5 L 289 5x65 G.H5 L 388 G.H5.20
Hydrophobic ICL2 R 202 34x54 G.H5 I 383 G.H5.15
Hydrophobic ICL2 F 199 34x51 G.H5 C 379 G.H5.11
Hydrophobic C-term S 368 - G.H5 L 394 G.H5.26
Van-der-waals C-term S 368 - G.H5 L 394 G.H5.26
Hydrophobic TM2 I 126 2x37 G.H5 Y 391 G.H5.23
Hydrophobic TM6 W 296 6x31 G.H5 R 385 G.H5.17
Polar ICL2 Y 201 34x53 G.H5 Y 391 G.H5.23
Hydrophobic ICL2 Y 201 34x53 G.H5 Y 391 G.H5.23
Van-der-waals ICL2 Y 201 34x53 G.H5 Y 391 G.H5.23
Hydrophobic TM7 M 361 7x56 G.H5 E 392 G.H5.24
Van-der-waals TM7 M 361 7x56 G.H5 E 392 G.H5.24
Aromatic ICL2 Y 201 34x53 G.H5 H 387 G.H5.19
Hydrophobic ICL2 Y 201 34x53 G.H5 H 387 G.H5.19
Van-der-waals ICL2 Y 201 34x53 G.H5 H 387 G.H5.19
Polar TM5 Y 292 5x68 G.H5 R 380 G.H5.12
Van-der-waals TM5 Y 292 5x68 G.H5 R 380 G.H5.12
Hydrophobic ICL2 P 198 34x50 G.H5 Q 384 G.H5.16
Polar C-term S 362 - G.H5 E 392 G.H5.24
Hydrophobic C-term S 362 - G.H5 E 392 G.H5.24
Van-der-waals C-term S 362 - G.H5 E 392 G.H5.24
Polar ICL2 R 202 34x54 G.S1 H 41 G.S1.02
Hydrophobic ICL2 R 202 34x54 G.S1 H 41 G.S1.02
Van-der-waals ICL2 R 202 34x54 G.S1 H 41 G.S1.02
Polar TM4 K 206 4x38 G.H5 H 387 G.H5.19
Van-der-waals TM4 K 206 4x38 G.H5 H 387 G.H5.19
Polar ICL2 R 202 34x54 G.h2s4 T 242 G.h2s4.05
Hydrophobic ICL2 R 202 34x54 G.h2s4 T 242 G.h2s4.05
Van-der-waals ICL2 R 202 34x54 G.h2s4 T 242 G.h2s4.05
Hydrophobic TM3 I 195 3x54 G.H5 L 388 G.H5.20
Van-der-waals TM3 I 195 3x54 G.H5 L 388 G.H5.20
Hydrophobic TM6 Y 299 6x34 G.H5 L 393 G.H5.25
Van-der-waals TM6 Y 299 6x34 G.H5 L 393 G.H5.25
Hydrophobic ICL2 F 199 34x51 G.S3 F 219 G.S3.03
Hydrophobic ICL2 G 203 34x55 G.hns1 A 39 G.hns1.03
Hydrophobic TM5 Y 292 5x68 G.H5 D 381 G.H5.13