Gi1 - EP4 receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 75.2

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.6
PAE mean: 13.8


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM3 A 120 3x53 G.H5 C 351 G.H5.23
Van-der-waals TM3 A 120 3x53 G.H5 C 351 G.H5.23
Hydrophobic ICL2 H 129 34x55 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 H 129 34x55 G.hns1 A 31 G.hns1.02
Hydrophobic TM6 I 263 6x26 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM6 I 263 6x26 G.h4s6 E 318 G.h4s6.12
Polar TM2 T 52 2x37 G.H5 D 350 G.H5.22
Hydrophobic TM2 T 52 2x37 G.H5 D 350 G.H5.22
Van-der-waals TM2 T 52 2x37 G.H5 D 350 G.H5.22
Hydrophobic ICL2 Y 127 34x53 G.H5 N 347 G.H5.19
Van-der-waals ICL2 Y 127 34x53 G.H5 N 347 G.H5.19
Hydrophobic TM6 M 270 6x33 G.H5 L 348 G.H5.20
Hydrophobic TM6 M 270 6x33 G.H5 F 354 G.H5.26
Van-der-waals TM6 M 270 6x33 G.H5 F 354 G.H5.26
Polar H8 R 333 8x47 G.H5 C 351 G.H5.23
Hydrophobic ICL2 Y 127 34x53 G.H5 D 350 G.H5.22
Polar ICL2 H 129 34x55 G.HN E 28 G.HN.52
Hydrophobic ICL2 H 129 34x55 G.HN E 28 G.HN.52
Van-der-waals ICL2 H 129 34x55 G.HN E 28 G.HN.52
Hydrophobic TM6 M 270 6x33 G.H5 L 353 G.H5.25
Van-der-waals TM6 M 270 6x33 G.H5 L 353 G.H5.25
Hydrophobic TM6 L 274 6x37 G.H5 L 353 G.H5.25
Polar C-term S 389 - G.s4h3 E 239 G.s4h3.13
Hydrophobic C-term S 389 - G.s4h3 E 239 G.s4h3.13
Van-der-waals C-term S 389 - G.s4h3 E 239 G.s4h3.13
Hydrophobic ICL2 S 128 34x54 G.H5 I 343 G.H5.15
Hydrophobic H8 T 335 8x49 G.H5 F 354 G.H5.26
Van-der-waals H8 T 335 8x49 G.H5 F 354 G.H5.26
Hydrophobic TM3 R 117 3x50 G.H5 L 353 G.H5.25
Polar ICL3 S 259 - G.h4s6 D 315 G.h4s6.09
Van-der-waals ICL3 S 259 - G.h4s6 D 315 G.h4s6.09
Polar ICL3 S 259 - G.h4s6 K 314 G.h4s6.08
Hydrophobic ICL3 S 259 - G.h4s6 K 314 G.h4s6.08
Van-der-waals ICL3 S 259 - G.h4s6 K 314 G.h4s6.08
Polar TM2 F 54 2x39 G.H5 D 350 G.H5.22
Hydrophobic TM2 F 54 2x39 G.H5 D 350 G.H5.22
Van-der-waals TM2 F 54 2x39 G.H5 D 350 G.H5.22
Hydrophobic TM3 I 121 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 I 121 3x54 G.H5 L 348 G.H5.20
Polar TM3 E 116 3x49 G.H5 C 351 G.H5.23
Hydrophobic TM3 E 116 3x49 G.H5 C 351 G.H5.23
Van-der-waals TM3 E 116 3x49 G.H5 C 351 G.H5.23
Hydrophobic ICL2 A 124 34x50 G.H5 I 343 G.H5.15
Hydrophobic ICL2 H 129 34x55 G.HN G 27 G.HN.51
Polar ICL2 Y 130 34x56 G.HN E 28 G.HN.52
Hydrophobic ICL2 Y 130 34x56 G.HN E 28 G.HN.52
Polar ICL2 Y 125 34x51 G.H5 F 336 G.H5.08
Hydrophobic ICL2 Y 125 34x51 G.H5 F 336 G.H5.08
Polar ICL3 R 256 - G.H4 C 305 G.H4.13
Hydrophobic ICL3 R 256 - G.H4 C 305 G.H4.13
Van-der-waals ICL3 R 256 - G.H4 C 305 G.H4.13
Ionic ICL3 R 256 - G.H4 E 308 G.H4.16
Polar ICL3 R 256 - G.H4 E 308 G.H4.16
Hydrophobic ICL3 R 256 - G.H4 E 308 G.H4.16
Van-der-waals ICL3 R 256 - G.H4 E 308 G.H4.16
Hydrophobic TM5 M 213 5x68 G.H5 D 341 G.H5.13
Van-der-waals TM5 M 213 5x68 G.H5 D 341 G.H5.13
Polar C-term S 392 - G.H2 R 205 G.H2.01
Van-der-waals C-term S 392 - G.H2 R 205 G.H2.01
Polar TM3 A 120 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 A 120 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 A 120 3x53 G.H5 N 347 G.H5.19
Hydrophobic ICL2 Y 125 34x51 G.H5 I 343 G.H5.15
Van-der-waals ICL2 Y 125 34x51 G.H5 I 343 G.H5.15
Hydrophobic TM2 F 54 2x39 G.H5 C 351 G.H5.23
Van-der-waals TM2 F 54 2x39 G.H5 C 351 G.H5.23
Polar ICL2 Y 127 34x53 G.H5 C 351 G.H5.23
Hydrophobic ICL2 Y 127 34x53 G.H5 C 351 G.H5.23
Van-der-waals ICL2 Y 127 34x53 G.H5 C 351 G.H5.23
Ionic TM5 R 220 5x75 G.H5 D 341 G.H5.13
Polar TM5 R 220 5x75 G.H5 D 341 G.H5.13
Van-der-waals TM5 R 220 5x75 G.H5 D 341 G.H5.13
Hydrophobic ICL2 A 124 34x50 G.H5 I 344 G.H5.16
Van-der-waals ICL2 A 124 34x50 G.H5 I 344 G.H5.16
Hydrophobic TM5 F 217 5x72 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM5 F 217 5x72 G.h4s6 E 318 G.h4s6.12
Ionic TM5 R 220 5x75 G.H5 D 337 G.H5.09
Van-der-waals TM5 R 220 5x75 G.H5 D 337 G.H5.09
Hydrophobic C-term L 396 - G.H3 S 252 G.H3.11
Van-der-waals C-term L 396 - G.H3 S 252 G.H3.11
Hydrophobic TM5 M 213 5x68 G.H5 I 344 G.H5.16
Van-der-waals TM5 M 213 5x68 G.H5 I 344 G.H5.16
Hydrophobic C-term L 396 - G.H2 R 208 G.H2.04
Polar ICL2 Y 130 34x56 G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 Y 130 34x56 G.hns1 R 32 G.hns1.03
Hydrophobic TM3 R 117 3x50 G.H5 C 351 G.H5.23
Polar ICL2 A 124 34x50 G.H5 N 347 G.H5.19
Van-der-waals ICL2 A 124 34x50 G.H5 N 347 G.H5.19
Hydrophobic TM6 L 273 6x36 G.H5 L 353 G.H5.25
Hydrophobic TM3 I 121 3x54 G.H5 I 344 G.H5.16
Hydrophobic TM6 A 266 6x29 G.H5 F 354 G.H5.26
Hydrophobic TM5 L 210 5x65 G.H5 L 348 G.H5.20
Hydrophobic ICL2 Y 125 34x51 G.H5 V 339 G.H5.11
Polar ICL2 Y 125 34x51 G.H5 T 340 G.H5.12
Hydrophobic ICL2 Y 125 34x51 G.H5 T 340 G.H5.12
Van-der-waals ICL2 Y 125 34x51 G.H5 T 340 G.H5.12
Polar C-term T 394 - G.H2 R 205 G.H2.01
Hydrophobic C-term T 394 - G.H2 R 205 G.H2.01
Van-der-waals C-term T 394 - G.H2 R 205 G.H2.01
Polar ICL2 H 129 34x55 G.hns1 R 32 G.hns1.03
Hydrophobic ICL2 H 129 34x55 G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 H 129 34x55 G.hns1 R 32 G.hns1.03
Hydrophobic TM2 F 54 2x39 G.H5 G 352 G.H5.24
Polar H8 R 333 8x47 G.H5 G 352 G.H5.24
Hydrophobic H8 R 333 8x47 G.H5 G 352 G.H5.24
Van-der-waals H8 R 333 8x47 G.H5 G 352 G.H5.24
Hydrophobic ICL2 Y 125 34x51 G.S3 L 194 G.S3.01
Van-der-waals ICL2 Y 125 34x51 G.S3 L 194 G.S3.01
Hydrophobic TM3 I 121 3x54 G.H5 L 353 G.H5.25
Ionic ICL3 R 256 - G.H4 D 309 G.H4.17
Polar ICL3 R 256 - G.H4 D 309 G.H4.17
Hydrophobic ICL3 R 256 - G.H4 D 309 G.H4.17
Van-der-waals ICL3 R 256 - G.H4 D 309 G.H4.17
Ionic TM6 R 262 6x25 G.h4s6 D 315 G.h4s6.09
Polar TM6 R 262 6x25 G.h4s6 D 315 G.h4s6.09
Hydrophobic TM6 R 262 6x25 G.h4s6 D 315 G.h4s6.09
Van-der-waals TM6 R 262 6x25 G.h4s6 D 315 G.h4s6.09