Gz - PTH2 receptor complex model

GPCR CLASS (FAMILY)

B1 (Secretin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 74.7

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.6
iPTM Score: 0.5
PAE mean: 19.7


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM5 L 340 5x61 G.H5 C 355 G.H5.26
Polar TM2 Y 178 2x48 G.HN R 24 G.HN.48
Polar TM6 S 364 6x41 G.H5 L 354 G.H5.25
Hydrophobic TM6 S 364 6x41 G.H5 L 354 G.H5.25
Van-der-waals TM6 S 364 6x41 G.H5 L 354 G.H5.25
Hydrophobic C-term V 496 - G.H3 R 249 G.H3.07
Van-der-waals C-term V 496 - G.H3 R 249 G.H3.07
Hydrophobic TM3 I 265 3x58 G.H5 L 349 G.H5.20
Hydrophobic ICL2 A 268 - G.H5 F 337 G.H5.08
Hydrophobic TM6 L 368 6x45 G.H5 L 354 G.H5.25
Ionic ICL2 D 272 - G.hns1 R 31 G.hns1.02
Polar ICL2 D 272 - G.hns1 R 31 G.hns1.02
Hydrophobic ICL2 D 272 - G.hns1 R 31 G.hns1.02
Van-der-waals ICL2 D 272 - G.hns1 R 31 G.hns1.02
Hydrophobic C-term G 494 - G.H3 L 250 G.H3.08
Van-der-waals C-term G 494 - G.H3 L 250 G.H3.08
Polar H8 E 419 8x49 G.H5 Y 351 G.H5.22
Hydrophobic H8 E 419 8x49 G.H5 Y 351 G.H5.22
Van-der-waals H8 E 419 8x49 G.H5 Y 351 G.H5.22
Polar C-term G 494 - G.H3 S 253 G.H3.11
Hydrophobic C-term G 494 - G.H3 S 253 G.H3.11
Van-der-waals C-term G 494 - G.H3 S 253 G.H3.11
Hydrophobic TM3 L 261 3x54 G.H5 L 354 G.H5.25
Hydrophobic TM6 K 360 6x37 G.H5 C 355 G.H5.26
Van-der-waals TM6 K 360 6x37 G.H5 C 355 G.H5.26
Hydrophobic TM6 V 367 6x44 G.H5 L 354 G.H5.25
Van-der-waals TM6 V 367 6x44 G.H5 L 354 G.H5.25
Hydrophobic C-term P 493 - G.H3 I 254 G.H3.12
Polar TM2 R 176 2x46 G.H5 Y 351 G.H5.22
Hydrophobic TM2 R 176 2x46 G.H5 Y 351 G.H5.22
Van-der-waals TM2 R 176 2x46 G.H5 Y 351 G.H5.22
Ionic TM5 K 343 5x64 G.H5 D 342 G.H5.13
Polar TM5 K 343 5x64 G.H5 D 342 G.H5.13
Hydrophobic TM5 K 343 5x64 G.H5 D 342 G.H5.13
Van-der-waals TM5 K 343 5x64 G.H5 D 342 G.H5.13
Hydrophobic TM5 L 340 5x61 G.H5 L 349 G.H5.20
Hydrophobic TM5 T 347 5x68 G.h4s6 E 319 G.h4s6.12
Van-der-waals TM5 T 347 5x68 G.h4s6 E 319 G.h4s6.12
Hydrophobic TM3 L 261 3x54 G.H5 I 352 G.H5.23
Van-der-waals TM3 L 261 3x54 G.H5 I 352 G.H5.23
Polar C-term Y 495 - G.H2 K 210 G.H2.05
Hydrophobic C-term Y 495 - G.H2 K 210 G.H2.05
Van-der-waals C-term Y 495 - G.H2 K 210 G.H2.05
Ionic ICL1 R 170 12x48 G.HN D 20 G.HN.44
Polar ICL1 R 170 12x48 G.HN D 20 G.HN.44
Van-der-waals ICL1 R 170 12x48 G.HN D 20 G.HN.44
Polar TM3 L 264 3x57 G.H5 N 348 G.H5.19
Hydrophobic TM3 L 264 3x57 G.H5 N 348 G.H5.19
Hydrophobic ICL2 F 269 - G.H5 V 340 G.H5.11
Hydrophobic C-term L 492 - G.H2 I 213 G.H2.08
Van-der-waals C-term L 492 - G.H2 I 213 G.H2.08
Aromatic ICL2 F 269 - G.H5 F 337 G.H5.08
Hydrophobic ICL2 F 269 - G.H5 F 337 G.H5.08
Van-der-waals ICL2 F 269 - G.H5 F 337 G.H5.08
Hydrophobic C-term P 493 - G.h2s4 F 216 G.h2s4.01
Van-der-waals C-term P 493 - G.h2s4 F 216 G.h2s4.01
Hydrophobic TM2 R 176 2x46 G.H5 I 352 G.H5.23
Ionic TM6 K 356 6x33 G.h4s6 E 316 G.h4s6.09
Polar TM6 K 356 6x33 G.h4s6 E 316 G.h4s6.09
Hydrophobic TM6 K 356 6x33 G.h4s6 E 316 G.h4s6.09
Van-der-waals TM6 K 356 6x33 G.h4s6 E 316 G.h4s6.09
Hydrophobic TM7 Y 413 7x57 G.H5 I 352 G.H5.23
Polar C-term G 494 - G.H2 R 209 G.H2.04
Hydrophobic C-term G 494 - G.H2 R 209 G.H2.04
Van-der-waals C-term G 494 - G.H2 R 209 G.H2.04
Hydrophobic C-term P 493 - G.H3 N 257 G.H3.15
Van-der-waals C-term P 493 - G.H3 N 257 G.H3.15
Polar ICL2 S 271 - G.hns1 R 32 G.hns1.03
Hydrophobic ICL2 S 271 - G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 S 271 - G.hns1 R 32 G.hns1.03
Hydrophobic TM3 L 264 3x57 G.H5 I 352 G.H5.23
Hydrophobic ICL2 A 268 - G.H5 T 341 G.H5.12
Van-der-waals ICL2 A 268 - G.H5 T 341 G.H5.12
Polar TM2 T 175 2x45 G.hns1 R 31 G.hns1.02
Van-der-waals TM2 T 175 2x45 G.hns1 R 31 G.hns1.02
Hydrophobic ICL2 F 269 - G.H5 I 344 G.H5.15
Van-der-waals ICL2 F 269 - G.H5 I 344 G.H5.15
Hydrophobic TM3 I 265 3x58 G.H5 I 345 G.H5.16
Van-der-waals TM3 I 265 3x58 G.H5 I 345 G.H5.16
Polar ICL2 T 273 - G.HN Q 28 G.HN.52
Hydrophobic ICL2 T 273 - G.HN Q 28 G.HN.52
Van-der-waals ICL2 T 273 - G.HN Q 28 G.HN.52
Hydrophobic ICL2 F 269 - G.S3 L 195 G.S3.01
Van-der-waals ICL2 F 269 - G.S3 L 195 G.S3.01
Hydrophobic ICL2 F 269 - G.S1 I 34 G.S1.02
Van-der-waals ICL2 F 269 - G.S1 I 34 G.S1.02