Ggust - S1P4 receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 80.2

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.6
PAE mean: 14.4


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type
GPCR
Segment

AA

Number
Generic
number

segment

AA

Number
Generic
number
Polar TM2 R 79 2x37 G.H5 K 349 G.H5.21
Van-der-waals TM2 R 79 2x37 G.H5 K 349 G.H5.21
Hydrophobic TM3 T 146 3x53 G.H5 C 351 G.H5.23
Van-der-waals TM3 T 146 3x53 G.H5 C 351 G.H5.23
Polar ICL2 T 157 34x57 G.HN Q 24 G.HN.48
Hydrophobic ICL2 T 157 34x57 G.HN Q 24 G.HN.48
Van-der-waals ICL2 T 157 34x57 G.HN Q 24 G.HN.48
Hydrophobic TM3 M 147 3x54 G.H5 I 344 G.H5.16
Polar TM3 R 143 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 143 3x50 G.H5 C 351 G.H5.23
Van-der-waals TM3 R 143 3x50 G.H5 C 351 G.H5.23
Polar TM6 R 239 6x23 G.S6 I 319 G.S6.01
Hydrophobic TM6 R 239 6x23 G.S6 I 319 G.S6.01
Van-der-waals TM6 R 239 6x23 G.S6 I 319 G.S6.01
Hydrophobic ICL2 P 150 34x50 G.H5 I 343 G.H5.15
Van-der-waals ICL2 P 150 34x50 G.H5 I 343 G.H5.15
Aromatic TM6 R 239 6x23 G.S6 Y 320 G.S6.02
Hydrophobic TM6 R 239 6x23 G.S6 Y 320 G.S6.02
Van-der-waals TM6 R 239 6x23 G.S6 Y 320 G.S6.02
Hydrophobic ICL2 S 154 34x54 G.HN A 27 G.HN.51
Polar TM3 M 147 3x54 G.H5 N 347 G.H5.19
Hydrophobic TM3 M 147 3x54 G.H5 N 347 G.H5.19
Van-der-waals TM3 M 147 3x54 G.H5 N 347 G.H5.19
Ionic TM6 K 245 6x29 G.h4s6 E 318 G.h4s6.12
Polar TM6 K 245 6x29 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM6 K 245 6x29 G.h4s6 E 318 G.h4s6.12
Polar TM6 A 242 6x26 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 T 252 6x36 G.H5 L 353 G.H5.25
Polar TM3 T 146 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 T 146 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 T 146 3x53 G.H5 N 347 G.H5.19
Hydrophobic ICL2 A 152 34x52 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 A 152 34x52 G.hns1 A 31 G.hns1.02
Hydrophobic TM2 V 81 2x39 G.H5 C 351 G.H5.23
Van-der-waals TM2 V 81 2x39 G.H5 C 351 G.H5.23
Hydrophobic TM6 L 249 6x33 G.H5 L 353 G.H5.25
Van-der-waals TM6 L 249 6x33 G.H5 L 353 G.H5.25
Hydrophobic TM3 R 143 3x50 G.H5 L 353 G.H5.25
Hydrophobic TM5 V 230 5x65 G.H5 I 344 G.H5.16
Polar TM2 W 80 2x38 G.H5 D 350 G.H5.22
Hydrophobic TM2 W 80 2x38 G.H5 D 350 G.H5.22
Van-der-waals TM2 W 80 2x38 G.H5 D 350 G.H5.22
Hydrophobic ICL2 V 151 34x51 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 V 151 34x51 G.hns1 A 31 G.hns1.02
Polar C-term S 349 - G.h4s6 E 315 G.h4s6.09
Hydrophobic C-term S 349 - G.h4s6 E 315 G.h4s6.09
Van-der-waals C-term S 349 - G.h4s6 E 315 G.h4s6.09
Aromatic TM6 R 248 6x32 G.H5 F 354 G.H5.26
Van-der-waals TM6 R 248 6x32 G.H5 F 354 G.H5.26
Van-der-waals TM2 V 81 2x39 G.H5 D 350 G.H5.22
Hydrophobic TM6 A 241 6x25 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM6 A 241 6x25 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 K 245 6x29 G.H5 F 354 G.H5.26
Hydrophobic TM6 K 245 6x29 G.H5 K 345 G.H5.17
Van-der-waals TM6 K 245 6x29 G.H5 K 345 G.H5.17
Hydrophobic ICL2 P 150 34x50 G.S3 L 194 G.S3.01
Hydrophobic ICL2 V 151 34x51 G.S3 L 194 G.S3.01
Hydrophobic TM2 W 80 2x38 G.H5 C 351 G.H5.23
Hydrophobic TM3 M 147 3x54 G.H5 C 351 G.H5.23
Hydrophobic ICL3 A 237 - G.S6 Y 320 G.S6.02
Ionic TM4 K 158 4x38 G.H5 D 350 G.H5.22
Polar TM4 K 158 4x38 G.H5 D 350 G.H5.22
Van-der-waals TM4 K 158 4x38 G.H5 D 350 G.H5.22
Polar TM3 R 149 3x56 G.H5 N 347 G.H5.19
Van-der-waals TM3 R 149 3x56 G.H5 N 347 G.H5.19
Hydrophobic TM6 L 249 6x33 G.H5 L 348 G.H5.20
Hydrophobic TM5 S 233 5x68 G.H5 I 344 G.H5.16
Van-der-waals TM5 S 233 5x68 G.H5 I 344 G.H5.16
Hydrophobic TM3 M 147 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 M 147 3x54 G.H5 L 348 G.H5.20
Hydrophobic ICL2 V 151 34x51 G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 V 151 34x51 G.hns1 R 32 G.hns1.03
Hydrophobic TM2 R 79 2x37 G.H5 D 350 G.H5.22
Ionic ICL3 K 236 - G.H5 D 337 G.H5.09
Polar ICL3 K 236 - G.H5 D 337 G.H5.09
Hydrophobic ICL3 K 236 - G.H5 D 337 G.H5.09
Van-der-waals ICL3 K 236 - G.H5 D 337 G.H5.09
Hydrophobic TM5 V 230 5x65 G.H5 L 348 G.H5.20