Ggust - succinate receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 84.3

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.7
PAE mean: 13.8


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Polar TM3 R 120 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 120 3x50 G.H5 C 351 G.H5.23
Van-der-waals TM3 R 120 3x50 G.H5 C 351 G.H5.23
Polar TM5 R 217 5x68 G.H5 T 340 G.H5.12
Van-der-waals TM5 R 217 5x68 G.H5 T 340 G.H5.12
Ionic H8 H 301 8x49 G.H5 D 350 G.H5.22
Hydrophobic H8 H 301 8x49 G.H5 D 350 G.H5.22
Van-der-waals H8 H 301 8x49 G.H5 D 350 G.H5.22
Polar TM6 L 225 6x28 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 L 225 6x28 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM6 L 225 6x28 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 L 225 6x28 G.H5 K 345 G.H5.17
Van-der-waals TM6 L 225 6x28 G.H5 K 345 G.H5.17
Hydrophobic TM6 L 233 6x36 G.H5 L 353 G.H5.25
Van-der-waals TM6 L 233 6x36 G.H5 L 353 G.H5.25
Hydrophobic TM3 I 123 3x53 G.H5 C 351 G.H5.23
Van-der-waals TM3 I 123 3x53 G.H5 C 351 G.H5.23
Hydrophobic ICL2 P 127 34x50 G.H5 T 340 G.H5.12
Hydrophobic TM6 V 221 6x24 G.H5 D 341 G.H5.13
Hydrophobic TM6 P 230 6x33 G.H5 F 354 G.H5.26
Van-der-waals TM6 P 230 6x33 G.H5 F 354 G.H5.26
Hydrophobic ICL2 P 127 34x50 G.H5 I 343 G.H5.15
Hydrophobic TM6 L 225 6x28 G.S6 Y 320 G.S6.02
Van-der-waals TM6 L 225 6x28 G.S6 Y 320 G.S6.02
Hydrophobic TM6 T 223 6x26 G.H5 D 341 G.H5.13
Van-der-waals TM6 T 223 6x26 G.H5 D 341 G.H5.13
Hydrophobic TM6 V 234 6x37 G.H5 L 353 G.H5.25
Van-der-waals TM6 V 234 6x37 G.H5 L 353 G.H5.25
Polar ICL2 E 130 34x53 G.s2s3 D 193 G.s2s3.02
Hydrophobic ICL2 E 130 34x53 G.s2s3 D 193 G.s2s3.02
Van-der-waals ICL2 E 130 34x53 G.s2s3 D 193 G.s2s3.02
Polar TM6 P 230 6x33 G.H5 L 353 G.H5.25
Hydrophobic TM6 P 230 6x33 G.H5 L 353 G.H5.25
Van-der-waals TM6 P 230 6x33 G.H5 L 353 G.H5.25
Hydrophobic ICL2 P 127 34x50 G.H5 I 344 G.H5.16
Van-der-waals ICL2 P 127 34x50 G.H5 I 344 G.H5.16
Hydrophobic TM6 L 227 6x30 G.H5 L 348 G.H5.20
Polar ICL2 P 127 34x50 G.H5 N 347 G.H5.19
Van-der-waals ICL2 P 127 34x50 G.H5 N 347 G.H5.19
Hydrophobic TM5 L 214 5x65 G.H5 L 348 G.H5.20
Hydrophobic ICL2 F 128 34x51 G.H5 I 343 G.H5.15
Van-der-waals ICL2 F 128 34x51 G.H5 I 343 G.H5.15
Hydrophobic TM5 R 217 5x68 G.H5 I 344 G.H5.16
Van-der-waals TM5 R 217 5x68 G.H5 I 344 G.H5.16
Hydrophobic TM3 I 124 3x54 G.H5 I 344 G.H5.16
Van-der-waals TM3 I 124 3x54 G.H5 I 344 G.H5.16
Hydrophobic TM6 L 227 6x30 G.H5 F 354 G.H5.26
Hydrophobic ICL2 E 130 34x53 G.s2s3 K 192 G.s2s3.01
Van-der-waals ICL2 E 130 34x53 G.s2s3 K 192 G.s2s3.01
Hydrophobic ICL2 F 128 34x51 G.H5 T 340 G.H5.12
Polar TM6 A 224 6x27 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 A 224 6x27 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM6 A 224 6x27 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 T 223 6x26 G.S6 Y 320 G.S6.02
Polar TM3 R 120 3x50 G.H5 G 352 G.H5.24
Hydrophobic TM6 K 229 6x32 G.H5 F 354 G.H5.26
Van-der-waals TM6 K 229 6x32 G.H5 F 354 G.H5.26
Hydrophobic TM4 K 135 4x38 G.hns1 R 32 G.hns1.03
Van-der-waals TM4 K 135 4x38 G.hns1 R 32 G.hns1.03
Hydrophobic TM3 I 124 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 I 124 3x54 G.H5 L 348 G.H5.20
Hydrophobic ICL2 F 128 34x51 G.S3 L 194 G.S3.01
Van-der-waals ICL2 F 128 34x51 G.S3 L 194 G.S3.01
Hydrophobic TM6 P 226 6x29 G.H5 F 354 G.H5.26
Hydrophobic H8 G 299 8x47 G.H5 G 352 G.H5.24
Van-der-waals H8 G 299 8x47 G.H5 G 352 G.H5.24
Hydrophobic TM6 L 225 6x28 G.H5 F 354 G.H5.26
Van-der-waals TM7 L 298 7x56 G.H5 F 354 G.H5.26
Hydrophobic TM6 P 230 6x33 G.H5 L 348 G.H5.20
Ionic TM5 R 217 5x68 G.H5 D 341 G.H5.13
Polar TM5 R 217 5x68 G.H5 D 341 G.H5.13
Hydrophobic TM5 R 217 5x68 G.H5 D 341 G.H5.13
Van-der-waals TM5 R 217 5x68 G.H5 D 341 G.H5.13
Hydrophobic TM7 L 298 7x56 G.H5 G 352 G.H5.24
Hydrophobic ICL1 N 54 - G.HN A 27 G.HN.51
Van-der-waals ICL1 N 54 - G.HN A 27 G.HN.51
Polar TM3 I 123 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 I 123 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 I 123 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 R 120 3x50 G.H5 L 353 G.H5.25
Van-der-waals TM3 R 120 3x50 G.H5 L 353 G.H5.25
Hydrophobic ICL2 F 128 34x51 G.s2s3 K 192 G.s2s3.01
Van-der-waals ICL2 F 128 34x51 G.s2s3 K 192 G.s2s3.01