G13 - TAS2R41 complex model

GPCR CLASS (FAMILY)

T2 (Taste 2)

SPECIES

Homo sapiens

G PROTEIN FAMILY

G12/13

DATE

2023-09-15

3D VIEW

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Tertiary structure confidence

(pLDDT score) avg.: 80.6

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.6
iPTM Score: 0.6
PAE mean: 19.2


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM6 H 229 6x31 G.H5 L 367 G.H5.16
Van-der-waals TM6 H 229 6x31 G.H5 L 367 G.H5.16
Hydrophobic TM6 P 224 6x26 G.h4s6 P 341 G.h4s6.20
Hydrophobic TM3 I 111 3x54 G.H5 L 374 G.H5.23
Van-der-waals TM3 I 111 3x54 G.H5 L 374 G.H5.23
Polar TM6 P 224 6x26 G.H5 Q 377 G.H5.26
Hydrophobic TM6 P 224 6x26 G.H5 H 368 G.H5.17
Hydrophobic TM6 A 232 6x34 G.H5 L 376 G.H5.25
Van-der-waals TM6 A 232 6x34 G.H5 L 376 G.H5.25
Hydrophobic TM6 A 232 6x34 G.H5 L 371 G.H5.20
Van-der-waals TM6 A 232 6x34 G.H5 L 371 G.H5.20
Hydrophobic ICL2 W 124 34x55 G.S3 P 217 G.S3.02
Van-der-waals ICL2 W 124 34x55 G.S3 P 217 G.S3.02
Hydrophobic TM3 I 111 3x54 G.H5 L 367 G.H5.16
Van-der-waals TM3 I 111 3x54 G.H5 L 367 G.H5.16
Polar TM3 K 110 3x53 G.H5 Q 373 G.H5.22
Van-der-waals TM3 K 110 3x53 G.H5 Q 373 G.H5.22
Hydrophobic TM6 A 228 6x30 G.H5 Q 377 G.H5.26
Van-der-waals TM6 A 228 6x30 G.H5 Q 377 G.H5.26
Hydrophobic ICL2 W 124 34x55 G.HN T 43 G.HN.52
Hydrophobic TM6 L 236 6x38 G.H5 M 375 G.H5.24
Van-der-waals TM6 L 236 6x38 G.H5 M 375 G.H5.24
Aromatic ICL3 H 219 - G.S6 Y 343 G.S6.02
Hydrophobic ICL3 H 219 - G.S6 Y 343 G.S6.02
Van-der-waals ICL3 H 219 - G.S6 Y 343 G.S6.02
Polar TM6 Q 227 6x29 G.H5 Q 377 G.H5.26
Hydrophobic TM6 Q 227 6x29 G.H5 Q 377 G.H5.26
Van-der-waals TM6 Q 227 6x29 G.H5 Q 377 G.H5.26
Hydrophobic ICL2 L 120 34x51 G.s2s3 N 215 G.s2s3.02
Hydrophobic TM6 R 231 6x33 G.H5 Q 377 G.H5.26
Hydrophobic TM7 F 285 7x55 G.H5 L 376 G.H5.25
Hydrophobic TM3 I 111 3x54 G.H5 M 375 G.H5.24
Van-der-waals TM3 I 111 3x54 G.H5 M 375 G.H5.24
Polar TM7 S 286 7x56 G.H5 M 375 G.H5.24
Hydrophobic TM7 S 286 7x56 G.H5 M 375 G.H5.24
Van-der-waals TM7 S 286 7x56 G.H5 M 375 G.H5.24
Hydrophobic TM5 L 207 5x65 G.H5 L 371 G.H5.20
Polar H8 R 291 8x51 G.H5 L 376 G.H5.25
Van-der-waals H8 R 291 8x51 G.H5 L 376 G.H5.25
Hydrophobic TM6 A 228 6x30 G.H5 H 368 G.H5.17
Van-der-waals TM6 A 228 6x30 G.H5 H 368 G.H5.17
Hydrophobic TM6 A 232 6x34 G.H5 M 375 G.H5.24
Hydrophobic TM5 M 214 5x72 G.S6 Y 343 G.S6.02
Polar TM7 S 286 7x56 G.H5 L 374 G.H5.23
Van-der-waals TM7 S 286 7x56 G.H5 L 374 G.H5.23
Hydrophobic TM3 F 107 3x50 G.H5 L 374 G.H5.23
Ionic ICL1 R 40 - G.HN D 35 G.HN.44
Polar ICL1 R 40 - G.HN D 35 G.HN.44
Hydrophobic ICL2 W 124 34x55 G.S3 V 216 G.S3.01
Hydrophobic TM6 S 225 6x27 G.h4s6 P 341 G.h4s6.20
Van-der-waals TM2 L 44 2x39 G.H5 Q 373 G.H5.22
Hydrophobic H8 L 288 8x48 G.H5 Q 377 G.H5.26
Van-der-waals H8 L 288 8x48 G.H5 Q 377 G.H5.26
Hydrophobic H8 L 288 8x48 G.H5 K 372 G.H5.21
Hydrophobic TM3 K 110 3x53 G.H5 L 374 G.H5.23
Van-der-waals TM3 K 110 3x53 G.H5 L 374 G.H5.23
Hydrophobic ICL2 W 124 34x55 G.HN Y 44 G.HN.53
Van-der-waals ICL2 W 124 34x55 G.HN Y 44 G.HN.53
Hydrophobic TM3 F 107 3x50 G.H5 M 375 G.H5.24
Hydrophobic TM3 I 111 3x54 G.H5 L 371 G.H5.20
Van-der-waals TM3 I 111 3x54 G.H5 L 371 G.H5.20
Polar TM6 S 225 6x27 G.H5 H 368 G.H5.17
Hydrophobic TM6 S 225 6x27 G.H5 H 368 G.H5.17
Hydrophobic TM6 H 229 6x31 G.H5 L 371 G.H5.20
Van-der-waals TM6 H 229 6x31 G.H5 L 371 G.H5.20
Aromatic ICL2 W 124 34x55 G.hns1 R 47 G.hns1.03
Hydrophobic ICL2 W 124 34x55 G.hns1 R 47 G.hns1.03
Van-der-waals ICL2 W 124 34x55 G.hns1 R 47 G.hns1.03
Hydrophobic ICL2 T 115 34x46 G.H5 K 363 G.H5.12
Van-der-waals ICL2 T 115 34x46 G.H5 K 363 G.H5.12
Hydrophobic TM5 H 210 5x68 G.H5 L 367 G.H5.16
Van-der-waals TM5 H 210 5x68 G.H5 L 367 G.H5.16
Ionic TM5 H 210 5x68 G.H5 D 364 G.H5.13
Polar TM5 H 210 5x68 G.H5 D 364 G.H5.13
Hydrophobic TM5 H 210 5x68 G.H5 D 364 G.H5.13
Van-der-waals TM5 H 210 5x68 G.H5 D 364 G.H5.13
Hydrophobic TM5 M 214 5x72 G.H5 D 364 G.H5.13
Van-der-waals TM5 M 214 5x72 G.H5 D 364 G.H5.13
Hydrophobic TM6 S 235 6x37 G.H5 L 376 G.H5.25
Van-der-waals TM6 S 235 6x37 G.H5 L 376 G.H5.25
Hydrophobic TM6 P 224 6x26 G.h4s6 K 340 G.h4s6.19
Polar ICL2 L 120 34x51 G.hns1 R 47 G.hns1.03
Van-der-waals ICL2 L 120 34x51 G.hns1 R 47 G.hns1.03
Hydrophobic TM6 R 231 6x33 G.H5 L 376 G.H5.25
Van-der-waals TM6 R 231 6x33 G.H5 L 376 G.H5.25
Hydrophobic TM5 N 217 5x75 G.H5 R 360 G.H5.09
Van-der-waals TM5 N 217 5x75 G.H5 R 360 G.H5.09
Hydrophobic TM2 L 44 2x39 G.H5 L 374 G.H5.23
Polar TM3 K 110 3x53 G.H5 N 370 G.H5.19
Hydrophobic TM3 K 110 3x53 G.H5 N 370 G.H5.19
Van-der-waals TM3 K 110 3x53 G.H5 N 370 G.H5.19
Polar TM7 S 286 7x56 G.H5 L 376 G.H5.25
Hydrophobic TM7 S 286 7x56 G.H5 L 376 G.H5.25
Van-der-waals TM7 S 286 7x56 G.H5 L 376 G.H5.25
Polar ICL2 N 113 34x44 G.H5 K 363 G.H5.12
Hydrophobic ICL2 N 113 34x44 G.H5 K 363 G.H5.12
Van-der-waals ICL2 N 113 34x44 G.H5 K 363 G.H5.12
Hydrophobic TM3 I 111 3x54 G.H5 N 370 G.H5.19