Gt1 - TAAR3 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

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Tertiary structure confidence

(pLDDT score) avg.: 81.7

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.6
PAE mean: 15.3


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Polar ICL2 T 140 34x54 G.hns1 A 27 G.hns1.02
Hydrophobic ICL2 T 140 34x54 G.hns1 A 27 G.hns1.02
Van-der-waals ICL2 T 140 34x54 G.hns1 A 27 G.hns1.02
Hydrophobic TM5 V 234 5x75 G.H4 L 304 G.H4.16
Polar TM4 N 145 4x39 G.HN E 24 G.HN.52
Hydrophobic TM3 V 133 3x54 G.H5 C 347 G.H5.23
Hydrophobic TM4 N 145 4x39 G.HN K 20 G.HN.48
Hydrophobic ICL2 P 136 34x50 G.H5 T 336 G.H5.12
Hydrophobic ICL2 P 136 34x50 G.H5 I 339 G.H5.15
Van-der-waals ICL2 P 136 34x50 G.H5 I 339 G.H5.15
Polar TM5 H 227 5x68 G.S6 Y 316 G.S6.02
Polar TM3 R 129 3x50 G.H5 C 347 G.H5.23
Hydrophobic TM3 R 129 3x50 G.H5 C 347 G.H5.23
Van-der-waals TM3 R 129 3x50 G.H5 C 347 G.H5.23
Hydrophobic ICL2 L 137 34x51 G.H5 T 336 G.H5.12
Hydrophobic TM5 I 231 5x72 G.h4s6 E 314 G.h4s6.12
Van-der-waals TM5 I 231 5x72 G.h4s6 E 314 G.h4s6.12
Hydrophobic TM5 P 235 5x76 G.H4 N 297 G.H4.08
Van-der-waals TM5 P 235 5x76 G.H4 N 297 G.H4.08
Polar H8 N 313 8x47 G.H5 D 346 G.H5.22
Van-der-waals H8 N 313 8x47 G.H5 D 346 G.H5.22
Hydrophobic TM5 V 234 5x75 G.H4 K 300 G.H4.12
Van-der-waals TM5 V 234 5x75 G.H4 K 300 G.H4.12
Polar TM5 H 227 5x68 G.H5 K 341 G.H5.17
Hydrophobic TM5 H 227 5x68 G.H5 K 341 G.H5.17
Van-der-waals TM5 H 227 5x68 G.H5 K 341 G.H5.17
Hydrophobic TM4 T 144 4x38 G.hns1 R 28 G.hns1.03
Van-der-waals TM4 T 144 4x38 G.hns1 R 28 G.hns1.03
Ionic ICL2 H 138 34x52 G.s2s3 D 189 G.s2s3.02
Polar ICL2 H 138 34x52 G.s2s3 D 189 G.s2s3.02
Hydrophobic ICL2 H 138 34x52 G.s2s3 D 189 G.s2s3.02
Hydrophobic TM6 K 250 6x29 G.H5 F 350 G.H5.26
Van-der-waals TM6 K 250 6x29 G.H5 F 350 G.H5.26
Polar TM6 T 257 6x36 G.H5 G 348 G.H5.24
Hydrophobic TM6 T 257 6x36 G.H5 G 348 G.H5.24
Van-der-waals TM6 T 257 6x36 G.H5 G 348 G.H5.24
Polar H8 W 315 8x49 G.H5 D 346 G.H5.22
Hydrophobic TM5 I 220 5x61 G.H5 L 349 G.H5.25
Van-der-waals TM5 I 220 5x61 G.H5 L 349 G.H5.25
Polar TM5 N 237 5x78 G.H4 D 294 G.H4.05
Polar TM6 A 254 6x33 G.H5 L 349 G.H5.25
Hydrophobic TM6 A 254 6x33 G.H5 L 349 G.H5.25
Van-der-waals TM6 A 254 6x33 G.H5 L 349 G.H5.25
Hydrophobic ICL2 L 137 34x51 G.S3 L 190 G.S3.01
Van-der-waals ICL2 L 137 34x51 G.S3 L 190 G.S3.01
Hydrophobic TM5 I 231 5x72 G.H5 F 350 G.H5.26
Polar TM6 K 253 6x32 G.H5 F 350 G.H5.26
Hydrophobic TM6 K 253 6x32 G.H5 F 350 G.H5.26
Van-der-waals TM6 K 253 6x32 G.H5 F 350 G.H5.26
Hydrophobic TM5 V 223 5x64 G.H5 I 340 G.H5.16
Ionic TM5 H 227 5x68 G.H5 D 337 G.H5.13
Polar TM5 H 227 5x68 G.H5 D 337 G.H5.13
Hydrophobic TM5 H 227 5x68 G.H5 D 337 G.H5.13
Van-der-waals TM5 H 227 5x68 G.H5 D 337 G.H5.13
Hydrophobic TM6 L 258 6x37 G.H5 L 349 G.H5.25
Van-der-waals TM6 L 258 6x37 G.H5 L 349 G.H5.25
Hydrophobic TM4 T 144 4x38 G.HN E 24 G.HN.52
Polar ICL2 T 141 34x55 G.hns1 R 28 G.hns1.03
Hydrophobic ICL2 T 141 34x55 G.hns1 R 28 G.hns1.03
Van-der-waals ICL2 T 141 34x55 G.hns1 R 28 G.hns1.03
Hydrophobic ICL2 P 136 34x50 G.H5 I 340 G.H5.16
Van-der-waals ICL2 P 136 34x50 G.H5 I 340 G.H5.16
Hydrophobic ICL2 L 137 34x51 G.H5 I 339 G.H5.15
Van-der-waals ICL2 L 137 34x51 G.H5 I 339 G.H5.15
Hydrophobic ICL2 L 137 34x51 G.s2s3 K 188 G.s2s3.01
Polar ICL2 H 138 34x52 G.s2s3 K 188 G.s2s3.01
Hydrophobic ICL2 H 138 34x52 G.s2s3 K 188 G.s2s3.01
Van-der-waals ICL2 H 138 34x52 G.s2s3 K 188 G.s2s3.01
Hydrophobic TM5 H 227 5x68 G.H5 I 340 G.H5.16
Van-der-waals TM5 H 227 5x68 G.H5 I 340 G.H5.16
Polar ICL2 T 140 34x54 G.hns1 R 28 G.hns1.03
Hydrophobic ICL2 T 140 34x54 G.hns1 R 28 G.hns1.03
Hydrophobic TM5 P 235 5x76 G.H4 K 300 G.H4.12
Van-der-waals TM5 P 235 5x76 G.H4 K 300 G.H4.12
Hydrophobic TM6 T 257 6x36 G.H5 L 349 G.H5.25
Hydrophobic TM3 V 133 3x54 G.H5 N 343 G.H5.19
Hydrophobic C-term F 339 - G.h3s5 T 257 G.h3s5.02
Hydrophobic TM3 V 133 3x54 G.H5 L 344 G.H5.20
Van-der-waals TM3 V 133 3x54 G.H5 L 344 G.H5.20
Polar TM3 A 132 3x53 G.H5 N 343 G.H5.19
Hydrophobic TM3 A 132 3x53 G.H5 N 343 G.H5.19
Van-der-waals TM3 A 132 3x53 G.H5 N 343 G.H5.19
Hydrophobic TM5 S 224 5x65 G.H5 L 344 G.H5.20
Van-der-waals TM5 S 224 5x65 G.H5 L 344 G.H5.20
Ionic TM6 K 250 6x29 G.h4s6 E 314 G.h4s6.12
Polar TM6 K 250 6x29 G.h4s6 E 314 G.h4s6.12
Van-der-waals TM6 K 250 6x29 G.h4s6 E 314 G.h4s6.12
Hydrophobic ICL2 T 141 34x55 G.s2s3 D 189 G.s2s3.02
Van-der-waals ICL2 T 141 34x55 G.s2s3 D 189 G.s2s3.02
Hydrophobic C-term A 342 - G.h4s6 R 309 G.h4s6.04
Van-der-waals C-term A 342 - G.h4s6 R 309 G.h4s6.04
Hydrophobic TM5 I 231 5x72 G.S6 Y 316 G.S6.02