Go - TRH1 receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 80.0

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.7
PAE mean: 14.6


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM6 V 264 6x33 G.H5 L 348 G.H5.20
Polar H8 S 324 8x47 G.H5 G 352 G.H5.24
Hydrophobic H8 S 324 8x47 G.H5 G 352 G.H5.24
Van-der-waals H8 S 324 8x47 G.H5 G 352 G.H5.24
Polar C-term Y 376 - H.HA Q 68 H.HA.06
Hydrophobic C-term Y 376 - H.HA Q 68 H.HA.06
Van-der-waals C-term Y 376 - H.HA Q 68 H.HA.06
Hydrophobic TM6 V 264 6x33 G.H5 Y 354 G.H5.26
Hydrophobic TM3 R 123 3x50 G.H5 L 353 G.H5.25
Van-der-waals TM3 R 123 3x50 G.H5 L 353 G.H5.25
Hydrophobic TM3 A 126 3x53 G.H5 C 351 G.H5.23
Polar TM3 R 123 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 123 3x50 G.H5 C 351 G.H5.23
Van-der-waals TM3 R 123 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM5 L 218 5x65 G.H5 L 348 G.H5.20
Van-der-waals TM5 L 218 5x65 G.H5 L 348 G.H5.20
Hydrophobic TM5 P 224 5x71 G.H5 D 337 G.H5.09
Hydrophobic TM5 I 223 5x70 G.H5 D 341 G.H5.13
Van-der-waals TM5 I 223 5x70 G.H5 D 341 G.H5.13
Hydrophobic ICL2 Q 134 34x54 G.H5 I 343 G.H5.15
Van-der-waals ICL2 Q 134 34x54 G.H5 I 343 G.H5.15
Polar TM2 T 60 2x39 G.H5 C 351 G.H5.23
Hydrophobic TM2 T 60 2x39 G.H5 C 351 G.H5.23
Van-der-waals TM2 T 60 2x39 G.H5 C 351 G.H5.23
Hydrophobic ICL2 I 131 34x51 G.H5 F 336 G.H5.08
Hydrophobic TM6 T 257 6x26 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM6 T 257 6x26 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM5 I 223 5x70 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM5 I 223 5x70 G.h4s6 E 318 G.h4s6.12
Polar TM6 S 260 6x29 G.H5 Y 354 G.H5.26
Hydrophobic TM6 S 260 6x29 G.H5 Y 354 G.H5.26
Van-der-waals TM6 S 260 6x29 G.H5 Y 354 G.H5.26
Polar C-term Y 376 - H.HA E 64 H.HA.02
Hydrophobic C-term Y 376 - H.HA E 64 H.HA.02
Van-der-waals C-term Y 376 - H.HA E 64 H.HA.02
Hydrophobic ICL2 P 130 34x50 G.H5 I 344 G.H5.16
Ionic TM6 R 261 6x30 G.H5 D 341 G.H5.13
Polar TM6 R 261 6x30 G.H5 D 341 G.H5.13
Van-der-waals TM6 R 261 6x30 G.H5 D 341 G.H5.13
Hydrophobic TM3 I 127 3x54 G.H5 I 344 G.H5.16
Hydrophobic TM5 L 218 5x65 G.H5 I 344 G.H5.16
Hydrophobic ICL2 Q 134 34x54 G.S1 V 34 G.S1.02
Ionic TM5 D 226 5x73 G.S6 H 322 G.S6.04
Polar TM5 D 226 5x73 G.S6 H 322 G.S6.04
Hydrophobic TM5 D 226 5x73 G.S6 H 322 G.S6.04
Van-der-waals TM5 D 226 5x73 G.S6 H 322 G.S6.04
Hydrophobic ICL2 I 131 34x51 G.s2s3 N 194 G.s2s3.02
Hydrophobic TM6 V 264 6x33 G.H5 L 353 G.H5.25
Van-der-waals TM6 V 264 6x33 G.H5 L 353 G.H5.25
Hydrophobic ICL2 P 130 34x50 G.H5 I 343 G.H5.15
Van-der-waals ICL2 P 130 34x50 G.H5 I 343 G.H5.15
Hydrophobic ICL3 W 234 - G.hgh4 G 293 G.hgh4.07
Hydrophobic ICL2 P 130 34x50 G.H5 T 340 G.H5.12
Hydrophobic TM5 I 223 5x70 G.S6 Y 320 G.S6.02
Van-der-waals TM5 I 223 5x70 G.S6 Y 320 G.S6.02
Hydrophobic ICL3 W 234 - G.hgh4 Y 291 G.hgh4.05
Hydrophobic TM3 I 127 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 I 127 3x54 G.H5 L 348 G.H5.20
Hydrophobic ICL2 F 135 34x55 G.hns1 K 32 G.hns1.03
Van-der-waals ICL2 F 135 34x55 G.hns1 K 32 G.hns1.03
Hydrophobic TM3 I 127 3x54 G.H5 L 353 G.H5.25
Hydrophobic TM6 L 268 6x37 G.H5 L 353 G.H5.25
Hydrophobic TM6 M 267 6x36 G.H5 L 353 G.H5.25
Van-der-waals TM6 M 267 6x36 G.H5 L 353 G.H5.25
Hydrophobic ICL2 I 131 34x51 G.S3 L 195 G.S3.01
Van-der-waals ICL2 I 131 34x51 G.S3 L 195 G.S3.01
Hydrophobic TM5 E 229 5x76 G.H4 E 298 G.H4.04
Polar H8 Q 325 8x48 G.H5 Y 354 G.H5.26
Hydrophobic H8 Q 325 8x48 G.H5 Y 354 G.H5.26
Van-der-waals H8 Q 325 8x48 G.H5 Y 354 G.H5.26
Hydrophobic C-term L 367 - H.hbhc M 114 H.hbhc.02
Van-der-waals C-term L 367 - H.hbhc M 114 H.hbhc.02
Polar TM2 T 60 2x39 G.H5 G 350 G.H5.22
Hydrophobic TM2 T 60 2x39 G.H5 G 350 G.H5.22
Van-der-waals TM2 T 60 2x39 G.H5 G 350 G.H5.22
Polar TM3 A 126 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 A 126 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 A 126 3x53 G.H5 N 347 G.H5.19