Go - V1B receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 78.0

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.7
PAE mean: 13.4


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM3 V 136 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 V 136 3x54 G.H5 L 348 G.H5.20
Hydrophobic TM2 M 69 2x39 G.H5 G 352 G.H5.24
Hydrophobic TM3 A 135 3x53 G.H5 C 351 G.H5.23
Hydrophobic TM2 M 69 2x39 G.H5 G 350 G.H5.22
Van-der-waals TM2 M 69 2x39 G.H5 G 350 G.H5.22
Hydrophobic ICL2 L 140 34x51 G.H5 F 336 G.H5.08
Hydrophobic ICL3 S 264 - G.S6 Y 320 G.S6.02
Van-der-waals ICL3 S 264 - G.S6 Y 320 G.S6.02
Polar TM6 T 271 6x25 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 T 271 6x25 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM6 T 271 6x25 G.h4s6 E 318 G.h4s6.12
Hydrophobic ICL3 W 244 - G.H4 Q 305 G.H4.12
Van-der-waals ICL3 W 244 - G.H4 Q 305 G.H4.12
Hydrophobic TM6 A 275 6x29 G.H5 L 353 G.H5.25
Van-der-waals TM6 A 275 6x29 G.H5 L 353 G.H5.25
Van-der-waals ICL2 L 143 34x54 G.hns1 A 31 G.hns1.02
Polar ICL3 S 268 - G.h4s6 E 318 G.h4s6.12
Hydrophobic ICL3 S 268 - G.h4s6 E 318 G.h4s6.12
Van-der-waals ICL3 S 268 - G.h4s6 E 318 G.h4s6.12
Van-der-waals TM7 F 341 7x56 G.H5 G 352 G.H5.24
Hydrophobic ICL2 P 139 34x50 G.H5 I 343 G.H5.15
Hydrophobic TM4 P 146 4x38 G.hns1 A 31 G.hns1.02
Hydrophobic ICL2 L 140 34x51 G.S3 L 195 G.S3.01
Hydrophobic TM4 P 146 4x38 G.HN I 28 G.HN.52
Polar TM6 R 278 6x32 G.H5 G 352 G.H5.24
Hydrophobic TM6 R 278 6x32 G.H5 G 352 G.H5.24
Van-der-waals TM6 R 278 6x32 G.H5 G 352 G.H5.24
Hydrophobic ICL2 L 140 34x51 G.H5 T 340 G.H5.12
Polar ICL2 L 143 34x54 G.hns1 K 32 G.hns1.03
Hydrophobic ICL2 L 143 34x54 G.hns1 K 32 G.hns1.03
Van-der-waals ICL2 L 143 34x54 G.hns1 K 32 G.hns1.03
Hydrophobic ICL2 L 140 34x51 G.H5 I 343 G.H5.15
Hydrophobic ICL2 L 143 34x54 G.S3 L 195 G.S3.01
Hydrophobic ICL3 W 244 - G.H4 A 302 G.H4.08
Van-der-waals ICL3 W 244 - G.H4 A 302 G.H4.08
Hydrophobic TM6 R 278 6x32 G.H5 L 353 G.H5.25
Van-der-waals TM6 R 278 6x32 G.H5 L 353 G.H5.25
Polar ICL3 S 264 - G.S6 C 321 G.S6.03
Hydrophobic ICL3 S 264 - G.S6 C 321 G.S6.03
Van-der-waals ICL3 S 264 - G.S6 C 321 G.S6.03
Polar ICL2 Q 144 34x55 G.hns1 K 32 G.hns1.03
Hydrophobic ICL2 Q 144 34x55 G.hns1 K 32 G.hns1.03
Van-der-waals ICL2 Q 144 34x55 G.hns1 K 32 G.hns1.03
Hydrophobic ICL2 L 143 34x54 G.S1 V 34 G.S1.02
Polar ICL3 S 267 - G.S6 I 319 G.S6.01
Van-der-waals ICL3 S 267 - G.S6 I 319 G.S6.01
Hydrophobic ICL2 P 139 34x50 G.H5 I 344 G.H5.16
Van-der-waals ICL2 P 139 34x50 G.H5 I 344 G.H5.16
Hydrophobic ICL3 S 268 - G.S6 Y 320 G.S6.02
Polar TM6 R 278 6x32 G.H5 Y 354 G.H5.26
Hydrophobic TM6 R 278 6x32 G.H5 Y 354 G.H5.26
Van-der-waals TM6 R 278 6x32 G.H5 Y 354 G.H5.26
Hydrophobic ICL2 L 143 34x54 G.H5 I 343 G.H5.15
Van-der-waals ICL2 L 143 34x54 G.H5 I 343 G.H5.15
Ionic ICL1 K 65 12x50 G.h2s4 D 218 G.h2s4.03
Polar ICL1 K 65 12x50 G.h2s4 D 218 G.h2s4.03
Hydrophobic ICL1 K 65 12x50 G.h2s4 D 218 G.h2s4.03
Van-der-waals ICL1 K 65 12x50 G.h2s4 D 218 G.h2s4.03
Hydrophobic ICL3 W 244 - G.H4 A 306 G.H4.13
Hydrophobic TM5 I 222 5x61 G.H5 L 353 G.H5.25
Ionic TM5 K 233 5x72 G.H5 D 341 G.H5.13
Polar TM5 K 233 5x72 G.H5 D 341 G.H5.13
Hydrophobic TM5 K 233 5x72 G.H5 D 341 G.H5.13
Van-der-waals TM5 K 233 5x72 G.H5 D 341 G.H5.13
Hydrophobic TM6 T 279 6x33 G.H5 L 353 G.H5.25
Polar TM3 A 135 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 A 135 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 A 135 3x53 G.H5 N 347 G.H5.19
Polar ICL2 P 139 34x50 G.H5 N 347 G.H5.19
Hydrophobic TM3 V 136 3x54 G.H5 L 353 G.H5.25
Hydrophobic TM5 I 226 5x65 G.H5 L 348 G.H5.20
Van-der-waals TM5 I 226 5x65 G.H5 L 348 G.H5.20
Hydrophobic TM6 A 275 6x29 G.H5 L 348 G.H5.20
Hydrophobic TM2 M 69 2x39 G.H5 C 351 G.H5.23
Van-der-waals TM2 M 69 2x39 G.H5 C 351 G.H5.23
Polar TM3 R 132 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 132 3x50 G.H5 C 351 G.H5.23
Van-der-waals TM3 R 132 3x50 G.H5 C 351 G.H5.23
Polar ICL2 Q 144 34x55 G.s2s3 N 194 G.s2s3.02
Van-der-waals ICL2 Q 144 34x55 G.s2s3 N 194 G.s2s3.02
Hydrophobic TM6 A 275 6x29 G.H5 Y 354 G.H5.26
Polar H8 N 342 8x47 G.H5 G 352 G.H5.24
Hydrophobic H8 N 342 8x47 G.H5 G 352 G.H5.24
Van-der-waals H8 N 342 8x47 G.H5 G 352 G.H5.24
Polar ICL3 S 267 - G.h4s6 E 318 G.h4s6.12
Hydrophobic ICL3 S 267 - G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 M 282 6x36 G.H5 L 353 G.H5.25
Van-der-waals TM6 M 282 6x36 G.H5 L 353 G.H5.25
Ionic ICL3 R 265 - G.H5 D 337 G.H5.09
Polar ICL3 R 265 - G.H5 D 337 G.H5.09
Hydrophobic ICL3 R 265 - G.H5 D 337 G.H5.09
Van-der-waals ICL3 R 265 - G.H5 D 337 G.H5.09
Hydrophobic TM6 T 271 6x25 G.H5 Y 354 G.H5.26
Van-der-waals TM6 T 271 6x25 G.H5 Y 354 G.H5.26
Hydrophobic ICL3 S 264 - G.S6 H 322 G.S6.04
Hydrophobic TM4 P 146 4x38 G.hns1 K 32 G.hns1.03