Structure information

NK2 receptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

7XWO

SPECIES

Homo sapiens

RESOLUTION

2.700

PREFERRED CHAIN

B

REFERENCE

PUBLICATION DATE

May 31, 2023

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
HIS-LYS-THR-ASP-SER-PHE-VAL-GLY-LEU-MET-NH2 N86 2.57x57 TM2 Van der Waals
HIS-LYS-THR-ASP-SER-PHE-VAL-GLY-LEU-MET-NH2 N86 2.57x57 TM2 polar (hydrogen bond)
HIS-LYS-THR-ASP-SER-PHE-VAL-GLY-LEU-MET-NH2 N86 2.57x57 TM2 polar (hydrogen bond)
HIS-LYS-THR-ASP-SER-PHE-VAL-GLY-LEU-MET-NH2 N90 2.61x61 TM2 Van der Waals
HIS-LYS-THR-ASP-SER-PHE-VAL-GLY-LEU-MET-NH2 N90 2.61x61 TM2 polar (hydrogen bond)
HIS-LYS-THR-ASP-SER-PHE-VAL-GLY-LEU-MET-NH2 Y93 2.64x64 TM2 polar (hydrogen bond)
HIS-LYS-THR-ASP-SER-PHE-VAL-GLY-LEU-MET-NH2 Y93 2.64x64 TM2 Van der Waals
HIS-LYS-THR-ASP-SER-PHE-VAL-GLY-LEU-MET-NH2 I114 3.33x33 TM3 hydrophobic
HIS-LYS-THR-ASP-SER-PHE-VAL-GLY-LEU-MET-NH2 I114 3.33x33 TM3 Van der Waals
HIS-LYS-THR-ASP-SER-PHE-VAL-GLY-LEU-MET-NH2 D175 ECL2 polar (charge-assisted hydrogen bond)
HIS-LYS-THR-ASP-SER-PHE-VAL-GLY-LEU-MET-NH2 C181 45.50x50 ECL2 Van der Waals
HIS-LYS-THR-ASP-SER-PHE-VAL-GLY-LEU-MET-NH2 C181 45.50x50 ECL2 hydrophobic
HIS-LYS-THR-ASP-SER-PHE-VAL-GLY-LEU-MET-NH2 Y266 6.51x51 TM6 Van der Waals
HIS-LYS-THR-ASP-SER-PHE-VAL-GLY-LEU-MET-NH2 Y266 6.51x51 TM6 hydrophobic
HIS-LYS-THR-ASP-SER-PHE-VAL-GLY-LEU-MET-NH2 F270 6.55x55 TM6 hydrophobic
HIS-LYS-THR-ASP-SER-PHE-VAL-GLY-LEU-MET-NH2 F270 6.55x55 TM6 Van der Waals
HIS-LYS-THR-ASP-SER-PHE-VAL-GLY-LEU-MET-NH2 Y280 ECL3 Van der Waals
HIS-LYS-THR-ASP-SER-PHE-VAL-GLY-LEU-MET-NH2 C281 ECL3 Van der Waals
HIS-LYS-THR-ASP-SER-PHE-VAL-GLY-LEU-MET-NH2 I285 7.31x30 TM7 hydrophobic
HIS-LYS-THR-ASP-SER-PHE-VAL-GLY-LEU-MET-NH2 I285 7.31x30 TM7 Van der Waals
HIS-LYS-THR-ASP-SER-PHE-VAL-GLY-LEU-MET-NH2 Q286 7.32x31 TM7 Van der Waals
HIS-LYS-THR-ASP-SER-PHE-VAL-GLY-LEU-MET-NH2 Y289 7.35x34 TM7 polar (hydrogen bond)
HIS-LYS-THR-ASP-SER-PHE-VAL-GLY-LEU-MET-NH2 Y289 7.35x34 TM7 polar (hydrogen bond)
HIS-LYS-THR-ASP-SER-PHE-VAL-GLY-LEU-MET-NH2 Y289 7.35x34 TM7 Van der Waals
HIS-LYS-THR-ASP-SER-PHE-VAL-GLY-LEU-MET-NH2 F293 7.39x38 TM7 Van der Waals

Ligands

HIS-LYS-THR-ASP-SER-PHE-VAL-GLY-LEU-MET-NH2

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Residue Diagrams

A N G T V A V L V L A L Y A T A W L A L 1 V N L A L A D L C M A A F N A A F N F V 2 A T M S Y I S V F M A T I P F L N Q F Y 3 T K A V I A G I W L V A L A L A S P Q 4 Y A V F M V A L P L F Y I L A I V V L H Y 5 V L V V L T F A I C W L P Y H L Y F I L 6 I P N Y M T S S M A L W F L A L Y V Q 7
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ICL1 R R M R ICL1ECL1 I W Y F ECL1ICL2 P F Q P R L ICL2ECL2 T V T M D Q G A T K C V V A W P E D ECL2ICL3 Q A H G ICL3ECL3 E D I Y C H ECL3N-term M G T C D I V T E A N I S S G P E S N T T G I T A F S M N-termC-term R C C P W V T P T K E D K L E L T P T T S L S T R V N R C H T K E T L F M A G D T A P S E A T S G E A G R P Q D G S G L W F G Y G L L A P T K T H V E I C-term P S W Q L A L W A T A Y L A L V L V A V T G N A I V I W I I L A H T V T N Y F I V N L A L A D L C M A A F N A A F N F V Y A S H N G R A F C Y F Q N L F P I T A M F V S I Y S M T A I A A D R Y M A I V H S A P S T K A V I A G I W L V A L A L A S P Q C F Y S S G G K T L L L Y H L V V I A L I Y F L P L A V M F V A Y S V I G L T L W R R A V P G H A N L R H L Q A M K K F V K T M V L V V L T F A I C W L P Y H L Y F I L G S F Q K F I Q Q V Y L A L F W L A M S S T M Y N P I I Y C C L N H R F R L F R S G A F
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Residue Table


GPCRdb(A)
GPCRdb(A)
NK2 receptor
TM2
2x57 2.57x57 N86
2x61 2.61x61 N90
2x64 2.64x64 Y93
TM3
3x33 3.33x33 I114
ECL2
45x50 45.50x50 C181
TM6
6x51 6.51x51 Y266
6x55 6.55x55 F270
TM7
7x30 7.31x30 I285
7x31 7.32x31 Q286
7x34 7.35x34 Y289
7x38 7.39x38 F293