Gs - TAS2R38 complex model

GPCR CLASS (FAMILY)

T2 (Taste 2)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gs

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 77.8

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.6
iPTM Score: 0.2
PAE mean: 24.9


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM2 D 54 2x40 G.H5 E 392 G.H5.24
Van-der-waals TM2 D 54 2x40 G.H5 E 392 G.H5.24
Hydrophobic TM3 K 120 3x53 G.H5 L 393 G.H5.25
Van-der-waals TM3 K 120 3x53 G.H5 L 393 G.H5.25
Hydrophobic ICL2 R 123 34x44 G.H5 R 380 G.H5.12
Hydrophobic TM3 L 121 3x54 G.H5 R 385 G.H5.17
Polar ICL2 C 131 34x52 G.s2s3 K 216 G.s2s3.02
Hydrophobic ICL2 C 131 34x52 G.s2s3 K 216 G.s2s3.02
Van-der-waals ICL2 C 131 34x52 G.s2s3 K 216 G.s2s3.02
Polar TM2 S 53 2x39 G.H5 L 393 G.H5.25
Hydrophobic TM2 S 53 2x39 G.H5 L 393 G.H5.25
Van-der-waals TM2 S 53 2x39 G.H5 L 393 G.H5.25
Polar TM2 S 51 2x37 G.H5 Y 391 G.H5.23
Hydrophobic TM2 S 51 2x37 G.H5 Y 391 G.H5.23
Van-der-waals TM2 S 51 2x37 G.H5 Y 391 G.H5.23
Hydrophobic TM3 L 121 3x54 G.H5 L 394 G.H5.26
Van-der-waals TM3 L 121 3x54 G.H5 L 394 G.H5.26
Van-der-waals ICL2 R 123 34x44 G.H5 Q 384 G.H5.16
Hydrophobic ICL2 I 130 34x51 G.s2s3 D 215 G.s2s3.01
Van-der-waals ICL2 I 130 34x51 G.s2s3 D 215 G.s2s3.01
Hydrophobic TM5 M 227 5x72 G.H5 I 382 G.H5.14
Hydrophobic TM5 M 227 5x72 G.S6 Y 360 G.S6.02
Hydrophobic TM6 P 237 6x26 G.h4s6 Y 358 G.h4s6.20
Van-der-waals TM6 P 237 6x26 G.h4s6 Y 358 G.h4s6.20
Hydrophobic TM2 S 51 2x37 G.H5 L 393 G.H5.25
Van-der-waals TM2 S 51 2x37 G.H5 L 393 G.H5.25
Ionic TM5 H 223 5x68 G.H5 D 381 G.H5.13
Polar TM5 H 223 5x68 G.H5 D 381 G.H5.13
Van-der-waals TM5 H 223 5x68 G.H5 D 381 G.H5.13
Polar TM2 S 51 2x37 G.H5 E 392 G.H5.24
Ionic ICL3 R 232 - G.hgh4 E 322 G.hgh4.12
Polar ICL3 R 232 - G.hgh4 E 322 G.hgh4.12
Hydrophobic ICL3 R 232 - G.hgh4 E 322 G.hgh4.12
Van-der-waals ICL3 R 232 - G.hgh4 E 322 G.hgh4.12
Polar TM6 S 238 6x27 G.H5 R 385 G.H5.17
Van-der-waals TM6 S 238 6x27 G.H5 R 385 G.H5.17
Polar TM5 V 229 5x74 G.hgh4 T 325 G.hgh4.15
Hydrophobic TM5 V 229 5x74 G.hgh4 T 325 G.hgh4.15
Van-der-waals TM5 V 229 5x74 G.hgh4 T 325 G.hgh4.15
Polar TM6 H 242 6x31 G.H5 R 385 G.H5.17
Hydrophobic TM6 H 242 6x31 G.H5 R 385 G.H5.17
Van-der-waals TM6 H 242 6x31 G.H5 R 385 G.H5.17
Ionic ICL2 R 123 34x44 G.H5 D 381 G.H5.13
Polar ICL2 R 123 34x44 G.H5 D 381 G.H5.13
Hydrophobic ICL2 R 123 34x44 G.H5 D 381 G.H5.13
Van-der-waals ICL2 R 123 34x44 G.H5 D 381 G.H5.13
Ionic H8 K 303 8x49 G.H5 E 392 G.H5.24
Polar H8 K 303 8x49 G.H5 E 392 G.H5.24
Hydrophobic H8 K 303 8x49 G.H5 E 392 G.H5.24
Van-der-waals H8 K 303 8x49 G.H5 E 392 G.H5.24
Ionic ICL2 R 123 34x44 G.H5 D 378 G.H5.10
Polar ICL2 R 123 34x44 G.H5 D 378 G.H5.10
Hydrophobic ICL2 R 123 34x44 G.H5 D 378 G.H5.10
Van-der-waals ICL2 R 123 34x44 G.H5 D 378 G.H5.10
Hydrophobic TM2 N 52 2x38 G.H5 L 393 G.H5.25
Hydrophobic ICL2 I 130 34x51 G.s2s3 K 216 G.s2s3.02
Polar ICL3 R 232 - G.hgh4 D 323 G.hgh4.13
Hydrophobic ICL3 R 232 - G.hgh4 D 323 G.hgh4.13
Van-der-waals ICL3 R 232 - G.hgh4 D 323 G.hgh4.13
Hydrophobic H8 N 301 8x47 G.H5 L 394 G.H5.26
Van-der-waals H8 N 301 8x47 G.H5 L 394 G.H5.26
Polar TM2 S 53 2x39 G.H5 E 392 G.H5.24
Van-der-waals TM2 S 53 2x39 G.H5 E 392 G.H5.24
Hydrophobic TM6 A 241 6x30 G.H5 L 394 G.H5.26
Hydrophobic TM3 Y 117 3x50 G.H5 L 393 G.H5.25
Van-der-waals TM3 Y 117 3x50 G.H5 L 393 G.H5.25
Hydrophobic ICL1 A 49 - G.hns1 R 38 G.hns1.02
Van-der-waals ICL1 A 49 - G.hns1 R 38 G.hns1.02
Hydrophobic TM3 K 120 3x53 G.H5 L 388 G.H5.20
Van-der-waals TM3 K 120 3x53 G.H5 L 388 G.H5.20
Polar TM5 H 223 5x68 G.H5 R 385 G.H5.17
Aromatic TM5 H 223 5x68 G.H5 R 385 G.H5.17
Hydrophobic TM5 H 223 5x68 G.H5 R 385 G.H5.17
Van-der-waals TM5 H 223 5x68 G.H5 R 385 G.H5.17
Hydrophobic TM6 S 238 6x27 G.S6 Y 360 G.S6.02
Van-der-waals TM6 S 238 6x27 G.S6 Y 360 G.S6.02
Polar ICL2 R 123 34x44 G.H5 N 377 G.H5.09
Hydrophobic ICL2 R 123 34x44 G.H5 N 377 G.H5.09
Van-der-waals ICL2 R 123 34x44 G.H5 N 377 G.H5.09
Polar TM5 Y 230 5x75 G.hgh4 T 325 G.hgh4.15
Hydrophobic H8 R 306 8x52 G.h4s6 R 356 G.h4s6.12
Van-der-waals H8 R 306 8x52 G.h4s6 R 356 G.h4s6.12
Hydrophobic TM6 A 245 6x34 G.H5 L 394 G.H5.26
Van-der-waals TM6 A 245 6x34 G.H5 L 394 G.H5.26